XM_002890463.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh1_pm.C_scaffold_1001899 T44459_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pm.C_scaffold_1001899 RRM 19 87

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

54 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.000
XM_002893090.1 Arabidopsis lyrata fgenesh2_kg.1__2278__AT1G20880.1 I 0.000
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.710
XM_002887685.1 Arabidopsis lyrata fgenesh2_kg.2__2123__AT1G78260.1 N 0.971
XM_002890498.1 Arabidopsis lyrata scaffold_102598.1 I 0.000
AT1G22910 Arabidopsis thaliana AT1G22910-TAIR-G I 0.000
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.000
AT1G20880 Arabidopsis thaliana AT1G20880-TAIR-G I 0.000
AT1G22330 Arabidopsis thaliana AT1G22330-TAIR-G N 0.971
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.725
AT1G78260 Arabidopsis thaliana AT1G78260-TAIR-G N 0.971
BRADI1G45540 Brachypodium distachyon BRADI1G45540 I 0.000
BRADI2G56676 Brachypodium distachyon BRADI2G56676 I 0.000
BRADI3G53240 Brachypodium distachyon BRADI3G53240 I 0.000
PK29603.1 Cannabis sativa PK29603.1 I 0.000
PK21213.1 Cannabis sativa PK21213.1 I 0.739
PK15672.1 Cannabis sativa PK15672.1 I 0.841
PK14266.1 Cannabis sativa PK14266.1 I 0.000
Cucsa.311530 Cucumis sativus Cucsa.311530 I 0.783
Cucsa.237790 Cucumis sativus Cucsa.237790 N 0.000
Cucsa.165980 Cucumis sativus Cucsa.165980 I 0.000
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.754
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.710
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.725
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.710
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.826
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.812
Glyma12g00500.1 Glycine max Glyma12g00500.1 I 0.000
Glyma09g36880.1 Glycine max Glyma09g36880.1 I 0.000
Glyma07g05590.1 Glycine max Glyma07g05590.1 I 0.000
Glyma06g14020.1 Glycine max Glyma06g14020.1 N 0.000
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.725
Glyma06g10750.1 Glycine max Glyma06g10750.1 I 0.797
Glyma04g40770.1 Glycine max Glyma04g40770.1 I 0.710
Glyma04g10900.1 Glycine max Glyma04g10900.1 I 0.797
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.768
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.768
chr1.CM0105.870.nc Lotus japonicus chr1.CM0105.870.nc N 0.000
LjT28A08.70.nc Lotus japonicus LjT28A08.70.nc I 0.000
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.710
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.000
MDP0000488395 Malus x domestica MDP0000488395 I 0.000
MDP0000548950 Malus x domestica MDP0000548950 I 0.000
MDP0000744398 Malus x domestica MDP0000744398 I 0.000
MDP0000857317 Malus x domestica MDP0000857317 I 0.000
MDP0000125082 Malus x domestica MDP0000125082 I 0.000
MDP0000271231 Malus x domestica MDP0000271231 N 0.000
MDP0000184420 Malus x domestica MDP0000184420 I 0.725
MDP0000181802 Malus x domestica MDP0000181802 N 0.000
MDP0000138486 Malus x domestica MDP0000138486 I 0.725
MDP0000134468 Malus x domestica MDP0000134468 I 0.812
MDP0000284454 Malus x domestica MDP0000284454 I 0.768
MDP0000118777 Malus x domestica MDP0000118777 I 0.000
MDP0000233609 Malus x domestica MDP0000233609 I 0.783
MDP0000308970 Malus x domestica MDP0000308970 I 0.000
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.739
cassava6634.valid.m1 Manihot esculenta cassava6634.valid.m1 I 0.000
cassava6633.valid.m1 Manihot esculenta cassava6633.valid.m1 I 0.000
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.841
cassava42438.valid.m1 Manihot esculenta cassava42438.valid.m1 I 0.000
cassava12008.valid.m1 Manihot esculenta cassava12008.valid.m1 N 0.000
cassava23405.valid.m1 Manihot esculenta cassava23405.valid.m1 I 0.710
cassava23406.valid.m1 Manihot esculenta cassava23406.valid.m1 I 0.710
cassava2993.m1 Manihot esculenta cassava2993.m1 I 0.000
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.739
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.000
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.870
cassava39894.m1 Manihot esculenta cassava39894.m1 N 0.000
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.739
Medtr4g041420 Medicago truncatula Medtr4g041420 I 0.000
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.841
CU179634_3 Medicago truncatula CU179634_3 I 0.725
mgf016660m Mimulus guttatus mgf016660m I 0.000
mgf002440m Mimulus guttatus mgf002440m N 0.000
mgf017214m Mimulus guttatus mgf017214m I 0.739
BGIOSIBCE005068 Oryza indica BGIOSIBCE005068 N 0.000
BGIOSIBCE008410 Oryza indica BGIOSIBCE008410 I 0.000
BGIOSIBCE004465 Oryza indica BGIOSIBCE004465 I 0.000
LOC_Os03g17760 Oryza sativa LOC_Os03g17760 I 0.000
LOC_Os03g14190 Oryza sativa LOC_Os03g14190 I 0.000
LOC_Os02g48340 Oryza sativa LOC_Os02g48340 I 0.000
LOC_Os01g72834 Oryza sativa LOC_Os01g72834 N 0.000
LOC_Os06g11730 Oryza sativa LOC_Os06g11730 I 0.710
LOC_Os01g65550 Oryza sativa LOC_Os01g65550 I 0.000
PDK_20s1420851g001 Phoenix dactylifera PDK_20s1420851g001 I 0.000
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.710
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.000
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.725
B9GUX4_POPTR Populus trichocarpa POPTR_0002s09830 I 0.841
B9HLZ0_POPTR Populus trichocarpa POPTR_0008s04430 I 0.000
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.739
XM_002329131.1 Populus trichocarpa POPTR_0019s09640 N 0.000
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.710
B9I875_POPTR Populus trichocarpa POPTR_0013s09120 I 0.000
A9P7Z9_POPTR Populus trichocarpa POPTR_0010s22380 I 0.000
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.754
ppa019392m Prunus persica ppa019392m I 0.870
ppa018926m Prunus persica ppa018926m I 0.870
ppa018603m Prunus persica ppa018603m I 0.000
ppa009964m Prunus persica ppa009964m I 0.754
ppa026384m Prunus persica ppa026384m I 0.000
ppa009564m Prunus persica ppa009564m I 0.000
ppa016222m Prunus persica ppa016222m I 0.710
29923.m000811 Ricinus communis 29923.m000811 I 0.000
30076.m004440 Ricinus communis 30076.m004440 I 0.710
30170.m013735 Ricinus communis 30170.m013735 I 0.000
29983.m003293 Ricinus communis 29983.m003293 I 0.000
29908.m006046 Ricinus communis 29908.m006046 I 0.783
e_gw1.23.82.1 Selaginella moellendorfii e_gw1.23.82.1 I 0.000
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.710
SB04G030020 Sorghum bicolor Sb04g030020 I 0.000
SB03G046430 Sorghum bicolor Sb03g046430 N 0.000
SB03G041530 Sorghum bicolor Sb03g041530 I 0.000
SB01G038700 Sorghum bicolor Sb01g038700 I 0.000
GSVIVG00037134001 Vitis vinifera GSVIVG00037134001 I 0.000
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.710
GSVIVG00013430001 Vitis vinifera GSVIVG00013430001 I 0.000
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.826
GRMZM2G005236 Zea mays GRMZM2G005236 I 0.000
GRMZM2G019266 Zea mays GRMZM2G019266 I 0.000
GRMZM2G042195 Zea mays GRMZM2G042195 I 0.000
GRMZM2G123796 Zea mays GRMZM2G123796 I 0.000
GRMZM2G073700 Zea mays GRMZM2G073700 I 0.000
GRMZM2G141386 Zea mays GRMZM2G141386 I 0.000