gw1.126.80.1 (Physcomitrella patens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 gw1.126.80.1 T53086_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.809
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
gw1.126.80.1 RRM 7 74

Links

Other RRM family RBPs
Other Physcomitrella patens RBPs

112 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.809
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.797
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.824
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.838
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.956
mgf016660m Mimulus guttatus mgf016660m I 0.721
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.868
mgf017214m Mimulus guttatus mgf017214m I 0.882
GRMZM2G005236 Zea mays GRMZM2G005236 I 0.721
GRMZM2G019266 Zea mays GRMZM2G019266 I 0.706
GRMZM2G042195 Zea mays GRMZM2G042195 I 0.765
GRMZM2G123796 Zea mays GRMZM2G123796 I 0.779
GRMZM2G141386 Zea mays GRMZM2G141386 I 0.750
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.765
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.779
Cucsa.165980 Cucumis sativus Cucsa.165980 I 0.765
Cucsa.311530 Cucumis sativus Cucsa.311530 I 0.754
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.779
e_gw1.23.82.1 Selaginella moellendorfii e_gw1.23.82.1 I 0.750
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.794
Glyma04g10900.1 Glycine max Glyma04g10900.1 I 0.739
Glyma04g40770.1 Glycine max Glyma04g40770.1 I 0.721
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.809
Glyma06g10750.1 Glycine max Glyma06g10750.1 I 0.739
Glyma07g05590.1 Glycine max Glyma07g05590.1 I 0.797
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.824
CU179634_3 Medicago truncatula CU179634_3 I 0.824
ppa026384m Prunus persica ppa026384m I 0.721
MDP0000488395 Malus x domestica MDP0000488395 I 0.794
MDP0000548950 Malus x domestica MDP0000548950 I 0.794
MDP0000744398 Malus x domestica MDP0000744398 I 0.794
MDP0000857317 Malus x domestica MDP0000857317 I 0.754
PDK_20s1420851g001 Phoenix dactylifera PDK_20s1420851g001 I 0.706
ppa009564m Prunus persica ppa009564m I 0.721
ppa009716m Prunus persica ppa009716m I 0.824
ppa009964m Prunus persica ppa009964m I 0.838
ppa016222m Prunus persica ppa016222m I 0.809
ppa018603m Prunus persica ppa018603m I 0.768
ppa018926m Prunus persica ppa018926m I 0.754
MDP0000308970 Malus x domestica MDP0000308970 I 0.721
MDP0000284454 Malus x domestica MDP0000284454 I 0.809
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.824
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.794
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.735
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.809
LjT28A08.70.nc Lotus japonicus LjT28A08.70.nc I 0.721
MDP0000118777 Malus x domestica MDP0000118777 I 0.754
MDP0000125082 Malus x domestica MDP0000125082 I 0.721
MDP0000134468 Malus x domestica MDP0000134468 I 0.750
MDP0000138486 Malus x domestica MDP0000138486 I 0.838
MDP0000184420 Malus x domestica MDP0000184420 I 0.809
MDP0000233609 Malus x domestica MDP0000233609 I 0.721
ppa019392m Prunus persica ppa019392m I 0.754
PK14266.1 Cannabis sativa PK14266.1 I 0.779
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.809
GSVIVG00013430001 Vitis vinifera GSVIVG00013430001 I 0.750
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.779
LOC_Os01g65550 Oryza sativa LOC_Os01g65550 I 0.706
LOC_Os02g48340 Oryza sativa LOC_Os02g48340 I 0.750
LOC_Os03g14190 Oryza sativa LOC_Os03g14190 I 0.721
LOC_Os03g17760 Oryza sativa LOC_Os03g17760 I 0.779
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.838
B9GUX4_POPTR Populus trichocarpa POPTR_0002s09830 I 0.754
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.794
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.838
XM_002893090.1 Arabidopsis lyrata fgenesh2_kg.1__2278__AT1G20880.1 I 0.735
PK15672.1 Cannabis sativa PK15672.1 I 0.768
PK21213.1 Cannabis sativa PK21213.1 I 0.853
PK29603.1 Cannabis sativa PK29603.1 I 0.725
AT1G20880 Arabidopsis thaliana AT1G20880-TAIR-G I 0.750
AT1G22910 Arabidopsis thaliana AT1G22910-TAIR-G I 0.706
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.768
BGIOSIBCE004465 Oryza indica BGIOSIBCE004465 I 0.706
BGIOSIBCE008410 Oryza indica BGIOSIBCE008410 I 0.750
BRADI3G53240 Brachypodium distachyon BRADI3G53240 I 0.750
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.783
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.838
B9HLZ0_POPTR Populus trichocarpa POPTR_0008s04430 I 0.706
A9P7Z9_POPTR Populus trichocarpa POPTR_0010s22380 I 0.779
30170.m013735 Ricinus communis 30170.m013735 I 0.721
cassava6633.valid.m1 Manihot esculenta cassava6633.valid.m1 I 0.721
cassava23405.valid.m1 Manihot esculenta cassava23405.valid.m1 I 0.783
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.779
cassava42438.valid.m1 Manihot esculenta cassava42438.valid.m1 I 0.735
cassava23406.valid.m1 Manihot esculenta cassava23406.valid.m1 I 0.783
cassava2993.m1 Manihot esculenta cassava2993.m1 I 0.765
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.779
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.794
30076.m004440 Ricinus communis 30076.m004440 I 0.809
29923.m000811 Ricinus communis 29923.m000811 I 0.750
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.809
SB01G038700 Sorghum bicolor Sb01g038700 I 0.765
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.868
cassava6634.valid.m1 Manihot esculenta cassava6634.valid.m1 I 0.721
SB03G041530 Sorghum bicolor Sb03g041530 I 0.706
SB04G030020 Sorghum bicolor Sb04g030020 I 0.765
XM_002890498.1 Arabidopsis lyrata scaffold_102598.1 I 0.735
29908.m006046 Ricinus communis 29908.m006046 I 0.721
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.824
AT1G22330 Arabidopsis thaliana AT1G22330-TAIR-G N 0.725
AT1G78260 Arabidopsis thaliana AT1G78260-TAIR-G N 0.739
Cucsa.237790 Cucumis sativus Cucsa.237790 N 0.706
BGIOSIBCE005068 Oryza indica BGIOSIBCE005068 N 0.706
GRMZM2G145562 Zea mays GRMZM2G145562 N 0.721
mgf002440m Mimulus guttatus mgf002440m N 0.735
LOC_Os01g72834 Oryza sativa LOC_Os01g72834 N 0.706
XM_002887685.1 Arabidopsis lyrata fgenesh2_kg.2__2123__AT1G78260.1 N 0.710
MDP0000181802 Malus x domestica MDP0000181802 N 0.721
Glyma06g14020.1 Glycine max Glyma06g14020.1 N 0.706
XM_002890463.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001899 N 0.710
MDP0000271231 Malus x domestica MDP0000271231 N 0.721
Medtr3g122940 Medicago truncatula Medtr3g122940 N 0.710