cassava22612.valid.m1 (Manihot esculenta)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 cassava22612.valid.m1 T62322_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava22612.valid.m1 YTH 400 490

Links

Other YTH family RBPs
Other Manihot esculenta RBPs

145 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.714
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.747
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.747
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.747
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.714
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.758
Glyma02g07920.1 Glycine max Glyma02g07920.1 N 0.780
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.769
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.725
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.769
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.725
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.725
Glyma16g04590.1 Glycine max Glyma16g04590.1 N 0.791
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.747
Glyma19g28710.1 Glycine max Glyma19g28710.1 N 0.802
mgf009938m Mimulus guttatus mgf009938m N 0.791
mgf013853m Mimulus guttatus mgf013853m N 0.791
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.747
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.747
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.714
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.758
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.758
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.736
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.736
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.736
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.747
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.747
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.747
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.747
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.747
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.747
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.747
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.747
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.747
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.747
mgf013935m Mimulus guttatus mgf013935m N 0.780
mgf019821m Mimulus guttatus mgf019821m N 0.725
MDP0000171737 Malus x domestica MDP0000171737 N 0.736
MDP0000231231 Malus x domestica MDP0000231231 N 0.747
MDP0000248088 Malus x domestica MDP0000248088 N 0.725
MDP0000286471 Malus x domestica MDP0000286471 N 0.747
MDP0000287088 Malus x domestica MDP0000287088 N 0.725
MDP0000306387 Malus x domestica MDP0000306387 N 0.769
MDP0000405927 Malus x domestica MDP0000405927 N 0.725
MDP0000488588 Malus x domestica MDP0000488588 N 0.736
MDP0000552419 Malus x domestica MDP0000552419 N 0.725
MDP0000617859 Malus x domestica MDP0000617859 N 0.725
MDP0000718677 Malus x domestica MDP0000718677 N 0.791
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.780
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.703
ppa002483m Prunus persica ppa002483m N 0.714
ppa002588m Prunus persica ppa002588m N 0.714
ppa003664m Prunus persica ppa003664m N 0.747
MDP0000132385 Malus x domestica MDP0000132385 N 0.769
MDP0000129009 Malus x domestica MDP0000129009 N 0.780
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.736
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.747
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.736
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.791
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.736
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.725
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.736
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.769
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.703
Medtr6g030790 Medicago truncatula Medtr6g030790 N 0.758
Medtr6g030800 Medicago truncatula Medtr6g030800 N 0.758
Medtr7g100450 Medicago truncatula Medtr7g100450 N 0.791
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.714
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.703
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.725
MDP0000124048 Malus x domestica MDP0000124048 N 0.758
ppa018635m Prunus persica ppa018635m N 0.747
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.714
PK01736.1 Cannabis sativa PK01736.1 N 0.703
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.747
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.714
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.725
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.747
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.703
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.703
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.747
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.769
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.802
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.835
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.714
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.780
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.747
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.703
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.791
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.736
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.714
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.769
PK02315.1 Cannabis sativa PK02315.1 N 0.736
PK17832.1 Cannabis sativa PK17832.1 N 0.736
PK23104.1 Cannabis sativa PK23104.1 N 0.725
PK23716.1 Cannabis sativa PK23716.1 N 0.758
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.703
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.736
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.714
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.813
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.747
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.769
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.846
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.747
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.747
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.780
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.747
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.736
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.747
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.736
SB07G006330 Sorghum bicolor Sb07g006330 N 0.736
SB07G024500 Sorghum bicolor Sb07g024500 N 0.736
29889.m003364 Ricinus communis 29889.m003364 N 0.714
29890.m000285 Ricinus communis 29890.m000285 N 0.703
29929.m004643 Ricinus communis 29929.m004643 N 0.736
29950.m001140 Ricinus communis 29950.m001140 N 0.879
29955.m001158 Ricinus communis 29955.m001158 N 0.725
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.725
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.747
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.747
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.747
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.747
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.725
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.725
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.758
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.758
SB06G027960 Sorghum bicolor Sb06g027960 N 0.703
SB02G003990 Sorghum bicolor Sb02g003990 N 0.780
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.780
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.780
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.747
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.736
B9GLB9_POPTR Populus trichocarpa POPTR_0001s03940 N 0.714
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.714
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.769
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.736
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.725
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.703
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.736
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.725
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.835
SB01G005500 Sorghum bicolor Sb01g005500 N 0.813
SB01G008170 Sorghum bicolor Sb01g008170 N 0.736
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.736
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.758