CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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gw1.198.66.1
(
Physcomitrella patens
)
YTH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF04146 (YTH)
IPR007275
gw1.198.66.1
T62413_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
gw1.198.66.1
YTH
32
122
LFFSVNASGQFCGMAQMTGRVDFSKSVDYWQQDKWNGRFPVTWHIIKDIPNCQFRHIILENNDNKPVTNSRDTQEVKFEQGMAMLNIFKIF
Links
Other
YTH
family RBPs
Other
Physcomitrella patens
RBPs
138 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PTTG_00731
Puccinia triticina
PTTG_00731
N
0.000
PTTG_06543
Puccinia triticina
PTTG_06543
N
0.000
nasonia_NCBI_hmm131144
Nasonia vitripennis
nasonia_NCBI_hmm131144
N
0.000
nasonia_NCBI_hmm36484
Nasonia vitripennis
nasonia_NCBI_hmm36484
N
0.000