PABPC3 (Tetraodon nigroviridis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTNIG00000013307 T42111_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.889
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.889
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.889
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.837
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.795
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000016297 RRM 13 89
ENSTNIP00000016297 RRM 107 175
ENSTNIP00000016297 RRM 199 268
ENSTNIP00000016297 RRM 302 370

Links

Other RRM family RBPs
Other Tetraodon nigroviridis RBPs

157 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
185682 Helobdella robusta 185682 I 0.713
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.821
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.814
AAA60936 Xenopus laevis AAA60936 I 0.884
AAEL010318 Aedes aegypti AAEL010318 I 0.723
AAH52100 Xenopus laevis AAH52100 I 0.888
AAH71118 Xenopus laevis AAH71118 I 0.804
AAH72110 Xenopus laevis AAH72110 I 0.888
AAH73435 Xenopus laevis AAH73435 I 0.853
AAH80020 Xenopus laevis AAH80020 I 0.804
AAI08463 Xenopus laevis AAI08463 I 0.888
AAK29408 Xenopus laevis AAK29408 I 0.804
AGAP011092 Anopheles gambiae AGAP011092 I 0.720
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.740
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.740
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.740
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.891
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.772
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.758
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.710
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.737
CAA40721 Xenopus laevis CAA40721 I 0.888
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.727
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.727
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.804
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.818
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.709
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.786
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.916
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.912
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.713
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.706
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.888
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.912
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.821
ENSMICG00000009121 Microcebus murinus ENSMICG00000009121 I 0.747
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.786
ENSMLUG00000012245 Myotis lucifugus ENSMLUG00000012245 I 0.726
ENSMODG00000012040 Monodelphis domestica ENSMODG00000012040 I 0.726
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.916
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.846
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.912
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.912
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.912
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.881
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.818
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.870
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.754
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.912
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.912
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.912
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.895
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.891
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.895
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.912
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.720
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.709
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.716
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.703
Gm10110 Mus musculus ENSMUSG00000062093 I 0.814
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.709
ISCW014211 Ixodes scapularis ISCW014211 I 0.734
LOC100054235 Equus caballus ENSECAG00000009396 I 0.821
LOC100056021 Equus caballus ENSECAG00000020699 I 0.811
LOC100070836 Equus caballus ENSECAG00000022681 I 0.758
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.891
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.912
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.727
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.727
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.727
P20965 Xenopus laevis P20965 I 0.888
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.905
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.916
PABPC1 Homo sapiens ENSG00000070756 D 0.912
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.912
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.916
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.916
pabpc1a Danio rerio ENSDARG00000017219 I 0.933
pabpc1b Danio rerio ENSDARG00000021140 I 0.888
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.793
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.758
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.768
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.716
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.740
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.772
PABPC1L Spermophilus tridecemlineatus ENSSTOG00000003739 I 0.705
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.740
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.747
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.782
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.821
pabpc1l Danio rerio ENSDARG00000002597 I 0.789
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.754
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.793
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.751
PABPC1L Homo sapiens ENSG00000101104 I 0.754
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.765
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.758
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.818
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.744
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.825
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.765
PABPC1L Gallus gallus ENSGALG00000004123 I 0.821
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.740
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.744
PABPC1L Bos taurus ENSBTAG00000016849 I 0.772
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.772
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.768
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.761
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.719
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.811
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.775
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.835
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.835
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.867
PABPC3 Homo sapiens ENSG00000151846 D 0.856
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.947
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.853
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.947
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.958
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.814
PABPC4 Gallus gallus ENSGALG00000003800 I 0.842
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.818
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.818
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.821
pabpc4 Danio rerio ENSDARG00000059259 I 0.825
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.821
PABPC4 Homo sapiens ENSG00000090621 D 0.818
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.825
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.818
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.814
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.821
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.818
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.737
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.828
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.821
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.821
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.793
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.821
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.811
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.842
PHUM617090 Pediculus humanus PHUM617090 I 0.727
Q2VIP1_9PRIM Gorilla gorilla ENSGGOG00000006785 I 0.745
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.867
Q6GR16 Xenopus laevis Q6GR16 I 0.804
Q6IP09 Xenopus laevis Q6IP09 I 0.888
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.825
Q98SP8 Xenopus laevis Q98SP8 I 0.804
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.832
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.863
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.782
XM_001379460.1 Monodelphis domestica ENSMODG00000015024 I 0.723
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.710
XP_002156904.1 Hydra magnipapillata XP_002156904.1 I 0.700
XP_002156940.1 Hydra magnipapillata XP_002156940.1 I 0.700
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.710
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.909
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.909