Q2VIP2_PANTR (Pan troglodytes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSPTRG00000022593 T40793_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.975
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.939
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.939
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.939
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.824
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSPTRP00000041427 RRM 13 83
ENSPTRP00000041427 RRM 101 169
ENSPTRP00000041427 RRM 193 262
ENSPTRP00000041427 RRM 296 364
ENSPTRP00000059048 RRM 13 83
ENSPTRP00000059048 RRM 101 169
ENSPTRP00000059048 RRM 193 262
ENSPTRP00000059048 RRM 296 364

Links

Other RRM family RBPs
Other Pan troglodytes RBPs

151 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAEL010318 Aedes aegypti AAEL010318 I 0.710
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.918
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.763
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.763
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.785
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.935
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.810
AGAP011092 Anopheles gambiae AGAP011092 I 0.717
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.724
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.724
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.724
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.735
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.828
PABPC1L Bos taurus ENSBTAG00000016849 I 0.771
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.707
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.707
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.907
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.742
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.939
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.824
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.760
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.828
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.939
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.728
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.746
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.832
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.703
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.710
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.710
pabpc1a Danio rerio ENSDARG00000017219 I 0.892
pabpc1l Danio rerio ENSDARG00000002597 I 0.785
pabpc1b Danio rerio ENSDARG00000021140 I 0.871
pabpc4 Danio rerio ENSDARG00000059259 I 0.824
LOC100070836 Equus caballus ENSECAG00000022681 I 0.749
LOC100054235 Equus caballus ENSECAG00000009396 I 0.828
LOC100056021 Equus caballus ENSECAG00000020699 I 0.824
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.821
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.742
PABPC4 Gallus gallus ENSGALG00000003800 I 0.839
PABPC1L Gallus gallus ENSGALG00000004123 I 0.803
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.814
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.857
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.900
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.810
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.824
Q2VIP1_9PRIM Gorilla gorilla ENSGGOG00000006785 I 0.775
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.753
185682 Helobdella robusta 185682 I 0.703
PABPC3 Homo sapiens ENSG00000151846 D 0.975
PABPC1 Homo sapiens ENSG00000070756 D 0.939
PABPC4 Homo sapiens ENSG00000090621 D 0.824
PABPC1L Homo sapiens ENSG00000101104 I 0.753
ISCW014211 Ixodes scapularis ISCW014211 I 0.715
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.710
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.939
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.763
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.828
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.828
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.756
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.939
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.957
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.756
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.806
ENSMICG00000009121 Microcebus murinus ENSMICG00000009121 I 0.746
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.828
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.792
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.738
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.885
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.814
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.829
ENSMODG00000012040 Monodelphis domestica ENSMODG00000012040 I 0.742
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.785
XM_001379460.1 Monodelphis domestica ENSMODG00000015024 I 0.739
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.929
Gm10110 Mus musculus ENSMUSG00000062093 I 0.821
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.864
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.882
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.935
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.817
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.724
ENSMLUG00000012245 Myotis lucifugus ENSMLUG00000012245 I 0.724
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.710
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.710
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.710
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.939
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.756
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.828
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.835
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.935
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.767
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.832
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.939
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.939
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.867
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.767
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.903
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.814
PABPC4 Otolemur garnettii ENSOGAG00000004067 I 0.706
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.935
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.749
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.824
PHUM617090 Pediculus humanus PHUM617090 I 0.717
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.824
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.975
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.753
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.939
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.746
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.753
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.939
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.824
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.935
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.720
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.864
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.803
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.885
PABPC4 Spermophilus tridecemlineatus ENSSTOG00000010416 I 0.703
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.763
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.939
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.828
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.835
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.785
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.935
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.871
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.817
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.810
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.900
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.918
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.749
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.867
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.875
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.735
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.814
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.735
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.939
Q98SP8 Xenopus laevis Q98SP8 I 0.799
AAI08463 Xenopus laevis AAI08463 I 0.885
AAK29408 Xenopus laevis AAK29408 I 0.799
CAA40721 Xenopus laevis CAA40721 I 0.882
P20965 Xenopus laevis P20965 I 0.882
Q6GR16 Xenopus laevis Q6GR16 I 0.792
Q6IP09 Xenopus laevis Q6IP09 I 0.885
AAH80020 Xenopus laevis AAH80020 I 0.799
AAH73435 Xenopus laevis AAH73435 I 0.846
AAH72110 Xenopus laevis AAH72110 I 0.885
AAH71118 Xenopus laevis AAH71118 I 0.792
AAH52100 Xenopus laevis AAH52100 I 0.882
AAA60936 Xenopus laevis AAA60936 I 0.878
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.903
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.785
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.767