ISCW014211 (Ixodes scapularis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ISCW014211 T44861_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.754
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.754
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.754
pAbp
M130_0.6 		Drosophila melanogaster GAAAAHV RNAcompete
Ray et al.(2013)
RNCMPT00139 		0.751
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.750
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.708
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ISCW014211-PA RRM 13 83
ISCW014211-PA RRM 101 170
ISCW014211-PA RRM 194 263
ISCW014211-PA RRM 297 366

Links

Other RRM family RBPs
Other Ixodes scapularis RBPs

150 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
185682 Helobdella robusta 185682 I 0.730
69344 Helobdella robusta 69344 I 0.705
AAA60936 Xenopus laevis AAA60936 I 0.754
AAEL010318 Aedes aegypti AAEL010318 I 0.791
AAH52100 Xenopus laevis AAH52100 I 0.757
AAH71118 Xenopus laevis AAH71118 I 0.708
AAH72110 Xenopus laevis AAH72110 I 0.757
AAH73435 Xenopus laevis AAH73435 I 0.761
AAH80020 Xenopus laevis AAH80020 I 0.715
AAI08463 Xenopus laevis AAI08463 I 0.757
AAK29408 Xenopus laevis AAK29408 I 0.715
AGAP011092 Anopheles gambiae AGAP011092 I 0.773
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.805
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.805
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.805
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.729
Aqu1.221418 Amphimedon queenslandica Aqu1.221418 N 0.701
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.790
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.805
Bm1_06880 Brugia malayi Bm1_06880 I 0.737
Bm1_16080 Brugia malayi Bm1_16080 I 0.737
CAA40721 Xenopus laevis CAA40721 I 0.757
CBG02207 Caenorhabditis briggsae CBG02207 N 0.715
CBN04295 Caenorhabditis brenneri CBN04295 I 0.719
CJA17800 Caenorhabditis japonica CJA17800 N 0.712
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.787
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.787
CRE22405 Caenorhabditis remanei CRE22405 N 0.701
DGIL_AUG5s1591g1t1 Acyrtosiphon pisum DGIL_AUG5s1591g1t1 I 0.716
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.748
DGIL_AUG5s9152g1t1 Acyrtosiphon pisum DGIL_AUG5s9152g1t1 I 0.716
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.715
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.718
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.757
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.757
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.757
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.757
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.715
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.754
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.757
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.739
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.757
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.705
pabpc1l Danio rerio ENSDARG00000002597 I 0.711
pabpc1a Danio rerio ENSDARG00000017219 I 0.768
pabpc1b Danio rerio ENSDARG00000021140 I 0.761
pabpc4 Danio rerio ENSDARG00000059259 I 0.754
LOC100054235 Equus caballus ENSECAG00000009396 I 0.757
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.754
PABPC1 Homo sapiens ENSG00000070756 D 0.757
PABPC4 Homo sapiens ENSG00000090621 D 0.754
PABPC3 Homo sapiens ENSG00000151846 D 0.708
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.711
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.761
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.743
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.754
PABPC4 Gallus gallus ENSGALG00000003800 I 0.768
PABPC1L Gallus gallus ENSGALG00000004123 I 0.715
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.754
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.757
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.757
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.708
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.715
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.757
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.736
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.757
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.757
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.718
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.754
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.701
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.739
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.761
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.750
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.757
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.711
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.739
Gm10110 Mus musculus ENSMUSG00000062093 I 0.754
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.757
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.768
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.757
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.757
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.757
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.757
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.754
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.757
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.743
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.764
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.754
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.722
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.757
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.754
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.754
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.715
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.757
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.757
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.736
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.761
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.708
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.739
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.757
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.757
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.701
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.768
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.707
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.757
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.764
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.734
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.743
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.761
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.743
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.704
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.761
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.736
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.757
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.761
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.701
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.701
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.759
estExt_Genewise1.C_sca_1150143 Lottia gigantea estExt_Genewise1.C_sca_1150143 I 0.762
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.787
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.772
e_gw1.7.538.1 Trichoplax adhaerens e_gw1.7.538.1 I 0.705
GA18673-RA Drosophila pseudoobscura FBgn0078673 I 0.759
GF12652 Drosophila ananassae FBgn0089688 I 0.762
GG21846 Drosophila erecta FBgn0114024 I 0.759
GH21052 Drosophila grimshawi FBgn0128514 I 0.791
GI18654 Drosophila mojavensis FBgn0141393 I 0.770
GL11548 Drosophila persimilis FBgn0149157 I 0.759
GM21847 Drosophila sechellia FBgn0176724 I 0.752
GD11341 Drosophila simulans FBgn0183090 I 0.755
GJ21671 Drosophila virilis FBgn0208790 I 0.777
GK19652 Drosophila willistoni FBgn0221650 I 0.770
GE11925 Drosophila yakuba FBgn0229707 I 0.759
pAbp Drosophila melanogaster FBgn0261619 D 0.752
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.737
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.787
LOAG_01058 Loa loa LOAG_01058 I 0.737
Minc05218 Meloidogyne incognita Minc05218 N 0.722
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.791
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.791
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.791
P20965 Xenopus laevis P20965 I 0.757
PHUM617090 Pediculus humanus PHUM617090 I 0.787
Q6GR16 Xenopus laevis Q6GR16 I 0.708
Q6IP09 Xenopus laevis Q6IP09 I 0.757
Q98SP8 Xenopus laevis Q98SP8 I 0.715
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.747
XP_002156904.1 Hydra magnipapillata XP_002156904.1 I 0.722
XP_002156940.1 Hydra magnipapillata XP_002156940.1 I 0.722
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.747