Pabpc2 (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000014527 T41097_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.910
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.910
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.910
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.853
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.828
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000019468 RRM 13 83
ENSRNOP00000019468 RRM 101 169
ENSRNOP00000019468 RRM 193 262
ENSRNOP00000019468 RRM 296 364

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

154 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.703
AAEL010318 Aedes aegypti AAEL010318 I 0.731
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.760
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.778
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.885
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.781
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.910
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.814
AGAP011092 Anopheles gambiae AGAP011092 I 0.717
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.728
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.728
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.728
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.724
PABPC1L Bos taurus ENSBTAG00000016849 I 0.774
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.828
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.724
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.724
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.882
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.749
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.910
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.828
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.771
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.828
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.910
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.739
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.756
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.832
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.724
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.721
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.731
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.731
pabpc4 Danio rerio ENSDARG00000059259 I 0.828
pabpc1l Danio rerio ENSDARG00000002597 I 0.781
pabpc1a Danio rerio ENSDARG00000017219 I 0.867
pabpc1b Danio rerio ENSDARG00000021140 I 0.861
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.701
LOC100070836 Equus caballus ENSECAG00000022681 I 0.767
LOC100056021 Equus caballus ENSECAG00000020699 I 0.796
LOC100054235 Equus caballus ENSECAG00000009396 I 0.828
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.760
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.824
PABPC4 Gallus gallus ENSGALG00000003800 I 0.839
PABPC1L Gallus gallus ENSGALG00000004123 I 0.839
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.849
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.817
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.871
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.803
Q2VIP1_9PRIM Gorilla gorilla ENSGGOG00000006785 I 0.750
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.760
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.828
185682 Helobdella robusta 185682 I 0.707
PABPC3 Homo sapiens ENSG00000151846 D 0.853
PABPC1L Homo sapiens ENSG00000101104 I 0.760
PABPC4 Homo sapiens ENSG00000090621 D 0.828
PABPC1 Homo sapiens ENSG00000070756 D 0.910
ISCW014211 Ixodes scapularis ISCW014211 I 0.736
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.717
estExt_Genewise1.C_sca_1150143 Lottia gigantea estExt_Genewise1.C_sca_1150143 I 0.703
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.910
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.767
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.828
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.910
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.878
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.763
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.828
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.778
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.842
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.792
ENSMICG00000009121 Microcebus murinus ENSMICG00000009121 I 0.753
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.760
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.828
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.871
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.799
ENSMODG00000012040 Monodelphis domestica ENSMODG00000012040 I 0.728
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.904
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.796
XM_001379460.1 Monodelphis domestica ENSMODG00000015024 I 0.714
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.829
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.821
Gm10110 Mus musculus ENSMUSG00000062093 I 0.824
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.910
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.989
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.731
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.867
ENSMLUG00000012245 Myotis lucifugus ENSMLUG00000012245 I 0.728
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.714
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.714
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.714
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.828
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.771
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.910
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.832
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.910
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.828
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.910
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.781
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.910
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.878
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.770
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.821
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.849
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.864
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.907
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.760
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.828
PHUM617090 Pediculus humanus PHUM617090 I 0.724
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.828
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.910
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.760
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.867
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.746
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.763
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.910
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.814
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.871
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.828
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.910
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.728
PABPC4 Spermophilus tridecemlineatus ENSSTOG00000010416 I 0.703
PABPC1L Spermophilus tridecemlineatus ENSSTOG00000003739 I 0.703
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.828
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.910
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.778
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.835
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.910
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.806
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.867
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.821
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.806
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.875
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.760
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.889
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.817
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.871
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.835
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.735
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.746
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.910
Q6IP09 Xenopus laevis Q6IP09 I 0.875
Q6GR16 Xenopus laevis Q6GR16 I 0.806
P20965 Xenopus laevis P20965 I 0.871
CAA40721 Xenopus laevis CAA40721 I 0.871
AAK29408 Xenopus laevis AAK29408 I 0.803
AAI08463 Xenopus laevis AAI08463 I 0.875
AAH80020 Xenopus laevis AAH80020 I 0.803
AAH73435 Xenopus laevis AAH73435 I 0.835
AAH72110 Xenopus laevis AAH72110 I 0.875
AAH71118 Xenopus laevis AAH71118 I 0.806
AAH52100 Xenopus laevis AAH52100 I 0.871
AAA60936 Xenopus laevis AAA60936 I 0.867
Q98SP8 Xenopus laevis Q98SP8 I 0.803
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.885
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.771
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.781