XM_002866364.1 (Arabidopsis lyrata)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 fgenesh2_kg.8__2071__AT5G61020.1 T62211_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.8__2071__AT5G61020.1 YTH 311 401

Links

Other YTH family RBPs
Other Arabidopsis lyrata RBPs

148 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.824
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.857
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.703
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.703
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.758
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.824
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.868
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.703
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.824
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.989
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.802
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.703
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.758
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.703
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.714
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.736
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.747
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.725
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.879
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.747
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.813
PK17832.1 Cannabis sativa PK17832.1 N 0.736
PK23716.1 Cannabis sativa PK23716.1 N 0.846
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.824
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.824
Glyma02g07920.1 Glycine max Glyma02g07920.1 N 0.802
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.824
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.714
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.703
Glyma16g04590.1 Glycine max Glyma16g04590.1 N 0.835
Glyma19g28710.1 Glycine max Glyma19g28710.1 N 0.835
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.703
MDP0000129009 Malus x domestica MDP0000129009 N 0.857
MDP0000718677 Malus x domestica MDP0000718677 N 0.868
MDP0000617859 Malus x domestica MDP0000617859 N 0.714
MDP0000124048 Malus x domestica MDP0000124048 N 0.846
MDP0000132385 Malus x domestica MDP0000132385 N 0.714
MDP0000286471 Malus x domestica MDP0000286471 N 0.703
MDP0000287088 Malus x domestica MDP0000287088 N 0.714
MDP0000306387 Malus x domestica MDP0000306387 N 0.714
MDP0000405927 Malus x domestica MDP0000405927 N 0.714
MDP0000488588 Malus x domestica MDP0000488588 N 0.824
MDP0000552419 Malus x domestica MDP0000552419 N 0.714
MDP0000248088 Malus x domestica MDP0000248088 N 0.714
MDP0000231231 Malus x domestica MDP0000231231 N 0.703
MDP0000171737 Malus x domestica MDP0000171737 N 0.725
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.857
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.857
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.835
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.879
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.879
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.736
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.736
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.736
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.857
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.857
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.857
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.703
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.879
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.879
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.879
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.714
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.714
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.879
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.879
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.879
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.879
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.879
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.879
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.879
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.879
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.879
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.736
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.703
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.868
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.868
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.868
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.868
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.736
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.879
Medtr6g030800 Medicago truncatula Medtr6g030800 N 0.813
Medtr6g030790 Medicago truncatula Medtr6g030790 N 0.813
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.703
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.813
Medtr7g100450 Medicago truncatula Medtr7g100450 N 0.835
mgf019821m Mimulus guttatus mgf019821m N 0.714
mgf009938m Mimulus guttatus mgf009938m N 0.857
mgf013853m Mimulus guttatus mgf013853m N 0.857
mgf013935m Mimulus guttatus mgf013935m N 0.879
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.736
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.703
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.736
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.703
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.703
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.703
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.824
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.769
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.703
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.736
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.813
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.703
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.736
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.703
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.824
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.736
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.769
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.835
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.714
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.714
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.857
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.703
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.714
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.703
B9GLB9_POPTR Populus trichocarpa POPTR_0001s03940 N 0.736
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.725
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.868
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.747
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.736
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.758
ppa002483m Prunus persica ppa002483m N 0.714
ppa002588m Prunus persica ppa002588m N 0.714
ppa003664m Prunus persica ppa003664m N 0.714
ppa018635m Prunus persica ppa018635m N 0.703
29890.m000285 Ricinus communis 29890.m000285 N 0.725
30169.m006347 Ricinus communis 30169.m006347 N 0.736
29950.m001140 Ricinus communis 29950.m001140 N 0.846
29929.m004643 Ricinus communis 29929.m004643 N 0.747
SB07G006330 Sorghum bicolor Sb07g006330 N 0.736
SB06G027960 Sorghum bicolor Sb06g027960 N 0.758
SB02G003990 Sorghum bicolor Sb02g003990 N 0.835
SB07G024500 Sorghum bicolor Sb07g024500 N 0.758
SB01G008170 Sorghum bicolor Sb01g008170 N 0.813
SB01G005500 Sorghum bicolor Sb01g005500 N 0.890
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.769
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.835
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.747
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.824
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.714
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.703
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.714
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.846
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.758
GRMZM2G056573 Zea mays GRMZM2G056573 N 0.703
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.747
GRMZM2G098174 Zea mays GRMZM2G098174 N 0.714
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.725
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.813
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.769