D3ZEY8_RAT (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000028592 T41193_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.950
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.857
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.857
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.857
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.792
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000059726 RRM 13 83
ENSRNOP00000059726 RRM 100 168
ENSRNOP00000059726 RRM 192 261
ENSRNOP00000059726 RRM 294 362

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

158 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPC4 Homo sapiens ENSG00000090621 D 0.950
PABPC3 Homo sapiens ENSG00000151846 D 0.792
PABPC1 Homo sapiens ENSG00000070756 D 0.857
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.975
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.814
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.724
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.957
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.857
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.785
PABPC4 Spermophilus tridecemlineatus ENSSTOG00000010416 I 0.810
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.810
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.892
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.882
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.832
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.707
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.875
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.804
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.832
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.860
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.785
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.860
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.857
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.882
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.767
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.821
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.828
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.943
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.767
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.857
PABPC4 Otolemur garnettii ENSOGAG00000004067 I 0.806
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.849
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.950
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.763
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.803
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.853
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.771
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.950
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.857
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.767
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.824
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.857
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.774
GH21052 Drosophila grimshawi FBgn0128514 I 0.704
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.828
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.774
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.882
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.715
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.715
AAA60936 Xenopus laevis AAA60936 I 0.832
AAH52100 Xenopus laevis AAH52100 I 0.835
AAH71118 Xenopus laevis AAH71118 I 0.796
AAH72110 Xenopus laevis AAH72110 I 0.842
AAH73435 Xenopus laevis AAH73435 I 0.889
AAH80020 Xenopus laevis AAH80020 I 0.792
AAI08463 Xenopus laevis AAI08463 I 0.842
AAK29408 Xenopus laevis AAK29408 I 0.792
CAA40721 Xenopus laevis CAA40721 I 0.835
P20965 Xenopus laevis P20965 I 0.835
Q6GR16 Xenopus laevis Q6GR16 I 0.796
Q6IP09 Xenopus laevis Q6IP09 I 0.842
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.749
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.735
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.828
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.842
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.763
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.857
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.746
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.842
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.821
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.778
GI18654 Drosophila mojavensis FBgn0141393 I 0.701
GJ21671 Drosophila virilis FBgn0208790 I 0.708
GK19652 Drosophila willistoni FBgn0221650 I 0.701
ISCW014211 Ixodes scapularis ISCW014211 I 0.739
PHUM617090 Pediculus humanus PHUM617090 I 0.760
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.711
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.707
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.735
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.724
Q98SP8 Xenopus laevis Q98SP8 I 0.792
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.857
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.731
PABPC4L Callithrix jacchus ENSCJAG00000003241 I 0.710
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.857
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.756
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.828
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.953
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.749
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.714
pabpc1l Danio rerio ENSDARG00000002597 I 0.774
pabpc1a Danio rerio ENSDARG00000017219 I 0.828
pabpc1b Danio rerio ENSDARG00000021140 I 0.818
pabpc4 Danio rerio ENSDARG00000059259 I 0.885
LOC100054235 Equus caballus ENSECAG00000009396 I 0.953
LOC100056021 Equus caballus ENSECAG00000020699 I 0.756
LOC100070836 Equus caballus ENSECAG00000022681 I 0.774
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.935
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.767
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.739
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.946
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.710
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.731
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.731
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.724
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.731
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.731
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.731
AAEL010318 Aedes aegypti AAEL010318 I 0.735
AGAP011092 Anopheles gambiae AGAP011092 I 0.739
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.739
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.839
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.799
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.860
PABPC1L Bos taurus ENSBTAG00000016849 I 0.781
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.953
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.857
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.953
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.771
PABPC1L Homo sapiens ENSG00000101104 I 0.767
ENSG00000250177 Homo sapiens ENSG00000250177 I 0.724
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.778
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.857
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.810
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.854
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.771
XM_001379460.1 Monodelphis domestica ENSMODG00000015024 I 0.721
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.789
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.817
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.896
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.950
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.860
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.806
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.814
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.731
Gm10110 Mus musculus ENSMUSG00000062093 I 0.953
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.860
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.892
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.946
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.771
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.953
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.828
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.814
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.878
PABPC4 Gallus gallus ENSGALG00000003800 I 0.900
PABPC1L Gallus gallus ENSGALG00000004123 I 0.803
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.950
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.767
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.953
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.763
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.857
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.778
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.806
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.953
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.771
ENSMICG00000009121 Microcebus murinus ENSMICG00000009121 I 0.713
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.910
PABPC4 Myotis lucifugus ENSMLUG00000012068 I 0.721
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.781