Ame_R018030 (Ailuropoda melanoleuca)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Ame_R018030 T55647_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.894
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.894
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.894
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.872
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.730
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Ame_R018030 RRM 16 85
Ame_R018030 RRM 106 175

Links

Other RRM family RBPs
Other Ailuropoda melanoleuca RBPs

236 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os01g24400 Oryza sativa LOC_Os01g24400 N 0.000
LOC_Os06g39920 Oryza sativa LOC_Os06g39920 N 0.000
LOC_Os07g19200 Oryza sativa LOC_Os07g19200 N 0.000
LOC_Os07g20560 Oryza sativa LOC_Os07g20560 N 0.000
LOC_Os07g23220 Oryza sativa LOC_Os07g23220 N 0.000
LOC_Os09g07850 Oryza sativa LOC_Os09g07850 N 0.000
LOC_Os10g01600 Oryza sativa LOC_Os10g01600 N 0.000
LOC_Os10g03070 Oryza sativa LOC_Os10g03070 N 0.000
LOC_Os10g13410 Oryza sativa LOC_Os10g13410 N 0.000
LOC_Os10g20660 Oryza sativa LOC_Os10g20660 N 0.000
LOC_Os10g22230 Oryza sativa LOC_Os10g22230 N 0.000
LOC_Os10g32124 Oryza sativa LOC_Os10g32124 N 0.000
LOC_Os12g12450 Oryza sativa LOC_Os12g12450 N 0.000
LOC_Os12g15580 Oryza sativa LOC_Os12g15580 N 0.000
LOC_Os12g22180 Oryza sativa LOC_Os12g22180 N 0.000
LOC_Os12g29900 Oryza sativa LOC_Os12g29900 N 0.000
LOC_Os06g11460 Oryza sativa LOC_Os06g11460 N 0.000
LOC_Os05g44870 Oryza sativa LOC_Os05g44870 N 0.000
LOC_Os01g27550 Oryza sativa LOC_Os01g27550 N 0.000
LOC_Os01g61490 Oryza sativa LOC_Os01g61490 N 0.000
LOC_Os02g10270 Oryza sativa LOC_Os02g10270 N 0.000
LOC_Os02g13750 Oryza sativa LOC_Os02g13750 N 0.000
LOC_Os02g29260 Oryza sativa LOC_Os02g29260 N 0.000
LOC_Os02g34350 Oryza sativa LOC_Os02g34350 N 0.000
LOC_Os02g45680 Oryza sativa LOC_Os02g45680 N 0.000
LOC_Os03g32600 Oryza sativa LOC_Os03g32600 N 0.000
LOC_Os04g01439 Oryza sativa LOC_Os04g01439 N 0.000
LOC_Os04g20840 Oryza sativa LOC_Os04g20840 N 0.000
LOC_Os04g26290 Oryza sativa LOC_Os04g26290 N 0.000
LOC_Os04g32750 Oryza sativa LOC_Os04g32750 N 0.000
LOC_Os05g02270 Oryza sativa LOC_Os05g02270 N 0.000
LOC_Os05g13730 Oryza sativa LOC_Os05g13730 N 0.000
LOC_Os05g17540 Oryza sativa LOC_Os05g17540 N 0.000
LOC_Os12g37810 Oryza sativa LOC_Os12g37810 N 0.000