CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Ame_R018030
(
Ailuropoda melanoleuca
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Ame_R018030
T55647_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPA1
M312_0.6
Homo sapiens
Sequence logo not available
UAGGGW
RIP-chip
Cook et al.(2011)
560_17925491
0.894
HNRNPA1
M271_0.6
Homo sapiens
UAGGGW
SELEX
Cook et al.(2011)
23_7510636
0.894
HNRNPA1
M022_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00022
0.894
HNRNPA1L2
M023_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00023
0.872
HNRNPA2B1
M024_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00024
0.730
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ame_R018030
RRM
16
85
LFIGGLSFETTDESLRSHFEQWGTPADCVMMRDPNTKRSRGFGFVTYATVEEGGAATNARPHSVDGRVVE
Ame_R018030
RRM
106
175
IFVAGIKEDSEEHHLRDYFEQCGKIEVIEIMTGRGSGKKRGFAFVTFDDHDSVDEIVVQKYHTVNGHNCE
Links
Other
RRM
family RBPs
Other
Ailuropoda melanoleuca
RBPs
236 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAH77813
Xenopus laevis
AAH77813
N
0.000
RBM39
Sus scrofa
ENSSSCG00000007309
N
0.000
RBM39
Sorex araneus
ENSSARG00000007673
N
0.000
Rbm39
Rattus norvegicus
ENSRNOG00000019848
N
0.000
RBM39
Pteropus vampyrus
ENSPVAG00000014944
N
0.000
RBM39
Pan troglodytes
ENSPTRG00000013449
N
0.000
ENSPPYG00000010963
Pongo pygmaeus
ENSPPYG00000010963
N
0.000
RBM39
Procavia capensis
ENSPCAG00000008764
N
0.000
RBM23
Oryzias latipes
ENSORLG00000010370
N
0.000
RBM39
Tupaia belangeri
ENSTBEG00000017320
N
0.000
RBM39
Taeniopygia guttata
ENSTGUG00000003048
N
0.000
RBM23
Tetraodon nigroviridis
ENSTNIG00000005223
N
0.000
AAH75146
Xenopus laevis
AAH75146
N
0.000
Ame_R004270
Ailuropoda melanoleuca
Ame_R004270
N
0.000
estExt_Genewise1.C_sca_90322
Lottia gigantea
estExt_Genewise1.C_sca_90322
N
0.000
rbm39
Xenopus tropicalis
ENSXETG00000007434
N
0.000
RBM39
Tursiops truncatus
ENSTTRG00000017039
N
0.000
RBM39
Tarsius syrichta
ENSTSYG00000005605
N
0.000
RBM23
Takifugu rubripes
ENSTRUG00000011352
N
0.000
RBM23
Tetraodon nigroviridis
ENSTNIG00000017904
N
0.000
RBM23
Oryzias latipes
ENSORLG00000009919
N
0.000
RBM39
Otolemur garnettii
ENSOGAG00000011227
N
0.000
B7NZJ5_RABIT
Oryctolagus cuniculus
ENSOCUG00000007050
N
0.000
RBM39
Dasypus novemcinctus
ENSDNOG00000025219
N
0.000
rbm39b
Danio rerio
ENSDARG00000041853
N
0.000
rbm39a
Danio rerio
ENSDARG00000011613
N
0.000
ENSCPOG00000021775
Cavia porcellus
ENSCPOG00000021775
N
0.000
RBM39
Cavia porcellus
ENSCPOG00000014625
N
0.000
B0KWM7_CALJA
Callithrix jacchus
ENSCJAG00000017535
N
0.000
RBM39
Canis familiaris
ENSCAFG00000008327
N
0.000
Q2HJD8_BOVIN
Bos taurus
ENSBTAG00000003949
N
0.000
RBM39
Equus caballus
ENSECAG00000013423
N
0.000
RBM39
Homo sapiens
ENSG00000131051
N
0.000
RBM23
Gasterosteus aculeatus
ENSGACG00000002797
N
0.000
Rbm39
Mus musculus
ENSMUSG00000027620
N
0.000
RBM39
Monodelphis domestica
ENSMODG00000001557
N
0.000
RBM39
Microcebus murinus
ENSMICG00000001668
N
0.000
RBM39
Meleagris gallopavo
ENSMGAG00000001509
N
0.000
RBM39
Loxodonta africana
ENSLAFG00000010346
N
0.000
RBM39
Gorilla gorilla
ENSGGOG00000003950
N
0.000
RBM39
Gallus gallus
ENSGALG00000001550
N
0.000
RBM23
Gasterosteus aculeatus
ENSGACG00000003376
N
0.000
RBM39
Anolis carolinensis
ENSACAG00000006436
N
0.000