CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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mgf014829m
(
Mimulus guttatus
)
YTH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF04146 (YTH)
IPR007275
mgf014829m
T62427_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
mgf014829m
YTH
371
461
LFFSVNGSGQFVGVAEMIGQVDFSKNMDFWQLDKWNGFFPIKWHMIKDVPNTLLRHIILENNENRPVTYSRDTQEIGLKQGLEMLRIFKNY
Links
Other
YTH
family RBPs
Other
Mimulus guttatus
RBPs
132 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CNBG_0311
Cryptococcus neoformans
CNBG_0311
N
0.000
PGTG_06023
Puccinia graminis
PGTG_06023
N
0.000
PTTG_06790
Puccinia triticina
PTTG_06790
N
0.000
estExt_Genewise1.C_80010
Melampsora laricis populina
estExt_Genewise1.C_80010
N
0.000
EDP45311.1
Malassezia globosa
EDP45311.1
N
0.000