Pabpc2 (Mus musculus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMUSG00000051732 T39377_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.910
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.910
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.910
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.853
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.828
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMUSP00000066639 RRM 13 83
ENSMUSP00000066639 RRM 101 169
ENSMUSP00000066639 RRM 193 262
ENSMUSP00000066639 RRM 296 364

Links

Other RRM family RBPs
Other Mus musculus RBPs

156 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29666.m001436 Ricinus communis 29666.m001436 I 0.000
29842.m003612 Ricinus communis 29842.m003612 N 0.000
A9PGI8_POPTR Populus trichocarpa POPTR_0001s45000 I 0.000
ATRBP45A Arabidopsis thaliana AT5G54900-TAIR-G N 0.000
ATRBP45C Arabidopsis thaliana AT4G27000-TAIR-G N 0.000
B9H1C9_POPTR Populus trichocarpa POPTR_0004s01690 N 0.000
BGIOSIBSE038779 Oryza indica BGIOSIBSE038779 N 0.000
cassava35906.valid.m1 Manihot esculenta cassava35906.valid.m1 I 0.000
cassava36999.valid.m1 Manihot esculenta cassava36999.valid.m1 I 0.000
cassava37000.valid.m1 Manihot esculenta cassava37000.valid.m1 I 0.000
cassava37001.valid.m1 Manihot esculenta cassava37001.valid.m1 I 0.000
cassava37002.valid.m1 Manihot esculenta cassava37002.valid.m1 I 0.000
cassava37003.valid.m1 Manihot esculenta cassava37003.valid.m1 I 0.000
chr4.CM1334.150.nc Lotus japonicus chr4.CM1334.150.nc N 0.000
chr6.CM0139.780.nd Lotus japonicus chr6.CM0139.780.nd I 0.000
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.000
Cucsa.085920 Cucumis sativus Cucsa.085920 I 0.000
Glyma07g38940.1 Glycine max Glyma07g38940.1 I 0.000
Glyma13g27570.1 Glycine max Glyma13g27570.1 I 0.000
Glyma15g11380.1 Glycine max Glyma15g11380.1 I 0.000
Glyma17g01800.1 Glycine max Glyma17g01800.1 I 0.000
GRMZM2G426591 Zea mays GRMZM2G426591 N 0.000
GSVIVG00031780001 Vitis vinifera GSVIVG00031780001 I 0.000
LOC_Os08g09100 Oryza sativa LOC_Os08g09100 N 0.000
MDP0000294628 Malus x domestica MDP0000294628 I 0.000
MDP0000614064 Malus x domestica MDP0000614064 N 0.000
Medtr8g146650 Medicago truncatula Medtr8g146650 N 0.000
mgf010468m Mimulus guttatus mgf010468m I 0.000
mgf014417m Mimulus guttatus mgf014417m N 0.000
PK10695.1 Cannabis sativa PK10695.1 I 0.000
ppa006577m Prunus persica ppa006577m I 0.000
ppa006617m Prunus persica ppa006617m N 0.000
XM_002864318.1 Arabidopsis lyrata fgenesh2_kg.8__1388__AT5G54900.1 N 0.000
XM_002867483.1 Arabidopsis lyrata scaffold_701590.1 I 0.000