LOC100411130 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000018953 T35661_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.968
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.968
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.968
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.907
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.849
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000049046 RRM 13 83
ENSCJAP00000049046 RRM 101 169
ENSCJAP00000049046 RRM 193 262
ENSCJAP00000049046 RRM 296 364

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

162 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.717
AAEL010318 Aedes aegypti AAEL010318 I 0.728
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.785
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.785
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.939
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.828
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.806
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.964
AGAP011092 Anopheles gambiae AGAP011092 I 0.739
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.746
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.746
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.746
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.753
PABPC1L Bos taurus ENSBTAG00000016849 I 0.785
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.853
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.724
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.724
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.849
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.760
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.968
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.778
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.853
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.968
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.742
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.857
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.763
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.717
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.714
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.731
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.731
pabpc1l Danio rerio ENSDARG00000002597 I 0.803
pabpc4 Danio rerio ENSDARG00000059259 I 0.846
pabpc1b Danio rerio ENSDARG00000021140 I 0.904
pabpc1a Danio rerio ENSDARG00000017219 I 0.918
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.711
GI18654 Drosophila mojavensis FBgn0141393 I 0.701
GK19652 Drosophila willistoni FBgn0221650 I 0.701
LOC100054235 Equus caballus ENSECAG00000009396 I 0.853
LOC100056021 Equus caballus ENSECAG00000020699 I 0.853
LOC100070836 Equus caballus ENSECAG00000022681 I 0.767
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.763
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.849
PABPC4 Gallus gallus ENSGALG00000003800 I 0.860
PABPC1L Gallus gallus ENSGALG00000004123 I 0.832
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.892
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.835
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.824
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.921
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.849
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.771
Q2VIP1_9PRIM Gorilla gorilla ENSGGOG00000006785 I 0.792
185682 Helobdella robusta 185682 I 0.721
PABPC3 Homo sapiens ENSG00000151846 D 0.907
PABPC1L Homo sapiens ENSG00000101104 I 0.771
PABPC1 Homo sapiens ENSG00000070756 D 0.968
PABPC4 Homo sapiens ENSG00000090621 D 0.849
XP_002156904.1 Hydra magnipapillata XP_002156904.1 I 0.704
XP_002156940.1 Hydra magnipapillata XP_002156940.1 I 0.704
ISCW014211 Ixodes scapularis ISCW014211 I 0.739
estExt_Genewise1.C_sca_1150143 Lottia gigantea estExt_Genewise1.C_sca_1150143 I 0.710
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.724
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.968
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.778
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.853
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.968
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.914
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.853
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.774
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.778
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.835
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.817
ENSMICG00000009121 Microcebus murinus ENSMICG00000009121 I 0.778
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.763
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.853
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.803
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.957
ENSMODG00000012040 Monodelphis domestica ENSMODG00000012040 I 0.763
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.832
XM_001379460.1 Monodelphis domestica ENSMODG00000015024 I 0.742
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.914
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.850
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.964
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.842
Gm10110 Mus musculus ENSMUSG00000062093 I 0.846
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.896
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.882
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.735
ENSMLUG00000012245 Myotis lucifugus ENSMLUG00000012245 I 0.763
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.728
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.728
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.728
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.718
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.774
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.853
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.968
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.860
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.964
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.857
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.968
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.968
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.785
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.839
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.784
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.892
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.925
PABPC4 Otolemur garnettii ENSOGAG00000004067 I 0.728
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.849
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.964
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.767
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.907
PHUM617090 Pediculus humanus PHUM617090 I 0.746
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.771
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.918
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.968
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.849
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.763
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.968
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.771
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.900
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.882
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.849
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.828
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.735
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.964
PABPC4 Spermophilus tridecemlineatus ENSSTOG00000010416 I 0.724
PABPC1L Spermophilus tridecemlineatus ENSSTOG00000003739 I 0.713
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.725
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.725
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.781
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.968
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.853
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.803
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.964
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.857
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.903
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.921
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.842
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.824
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.946
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.771
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.907
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.891
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.839
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.753
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.753
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.968
Q6GR16 Xenopus laevis Q6GR16 I 0.817
P20965 Xenopus laevis P20965 I 0.910
Q6IP09 Xenopus laevis Q6IP09 I 0.918
CAA40721 Xenopus laevis CAA40721 I 0.910
AAK29408 Xenopus laevis AAK29408 I 0.810
AAI08463 Xenopus laevis AAI08463 I 0.918
AAH80020 Xenopus laevis AAH80020 I 0.810
AAH73435 Xenopus laevis AAH73435 I 0.871
AAH72110 Xenopus laevis AAH72110 I 0.918
AAH71118 Xenopus laevis AAH71118 I 0.817
AAH52100 Xenopus laevis AAH52100 I 0.910
AAA60936 Xenopus laevis AAA60936 I 0.907
Q98SP8 Xenopus laevis Q98SP8 I 0.810
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.935
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.806
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.792