CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSMMUG00000022448
(
Macaca mulatta
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMMUG00000022448
T39001_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPA1
M312_0.6
Homo sapiens
Sequence logo not available
UAGGGW
RIP-chip
Cook et al.(2011)
560_17925491
0.879
HNRNPA1
M271_0.6
Homo sapiens
UAGGGW
SELEX
Cook et al.(2011)
23_7510636
0.879
HNRNPA1
M022_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00022
0.879
HNRNPA1L2
M023_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00023
0.858
HNRNPA2B1
M024_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00024
0.709
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMMUP00000040852
RRM
9
78
LFIGVLSFETTNESLRSHFEQWGTLLDGVVMRVANTKHSRVFGFFAYATVEEVDAAMNARPHKVDGRVVE
ENSMMUP00000040852
RRM
100
170
IFVGGIKEDTEEHHHLIDYFEQYGKIEVTEIMTDRGSGKKRGFAFVTFDDHDSVDKLVVQKYHAVNGHNCE
Links
Other
RRM
family RBPs
Other
Macaca mulatta
RBPs
279 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
A7TLF2_VANPO
Vanderwaltozyma polyspora
A7TLF2_VANPO
N
0.000
AB07703.1
Alternaria brassicicola
AB07703.1
N
0.000
ACL082W
Ashbya gossypii
ACL082W
N
0.000
ARB_01723
Arthroderma benhamiae
ARB_01723
N
0.000
BDBG_01641
Blastomyces dermatitidis
BDBG_01641
N
0.000
ACLA_016930
Aspergillus clavatus
CADACLAG00000891
N
0.000
ATEG_06133
Aspergillus terreus
CADATEAG00002525
N
0.000
CAGL0J08679g
Candida glabrata
CAGL0J08679g
N
0.000
CC1G_07829
Coprinopsis cinerea
CC1G_07829
N
0.000
ENSCING00000006888
Ciona intestinalis
ENSCING00000006888
N
0.000
estExt_Genewise1.C_30385
Mucor circinelloides
estExt_Genewise1.C_30385
N
0.000
estExt_Genewise1.C_60471
Cochliobolus heterostrophus C5
estExt_Genewise1.C_60471
N
0.000
e_gw1.2.668.1
Sporobolomyces roseus
e_gw1.2.668.1
N
0.000
e_gw1.8.939.1
Pleurotus ostreatus
e_gw1.8.939.1
N
0.000
gwh2.4.391.1
Phanerochaete chrysosporium
gwh2.4.391.1
N
0.000
HCAG_08348
Histoplasma capsulatum
HCAG_08348
N
0.000
KLTH0G08162g
Kluyveromyces thermotolerans
KLTH0G08162g
N
0.000
Kwal_2969
Kluyveromyces waltii
Kwal_2969
N
0.000
MCYG_02954
Microsporum canis
MCYG_02954
N
0.000
MGG_07010
Magnaporthe oryzae
MGG_07010
N
0.000
MGYG_00125
Microsporum gypseum
MGYG_00125
N
0.000
Pa_3_8730
Podospora anserina
Pa_3_8730
N
0.000
PITG_04608
Phytophthora infestans
PITG_04608
N
0.000
SAKL0E09966g
Lachancea kluyveri
SAKL0E09966g
N
0.000
Scas_Contig578.9
Saccharomyces castellii
Scas_Contig578.9
N
0.000
s_451242
Phytophthora sojae
s_451242
N
0.000
TEQG_08385
Trichophyton equinum
TEQG_08385
N
0.000
TERG_01412
Trichophyton rubrum
TERG_01412
N
0.000
TESG_03135
Trichophyton tonsurans
TESG_03135
N
0.000
TRV_03417
Trichophyton verrucosum
TRV_03417
N
0.000