ENSTSYG00000004229 (Tarsius syrichta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTSYG00000004229 T42431_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.978
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.978
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.978
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.914
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.857
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTSYP00000003879 RRM 13 83
ENSTSYP00000003879 RRM 101 169
ENSTSYP00000003879 RRM 193 262
ENSTSYP00000003879 RRM 296 364

Links

Other RRM family RBPs
Other Tarsius syrichta RBPs

164 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
185682 Helobdella robusta 185682 I 0.717
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.860
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.857
AAA60936 Xenopus laevis AAA60936 I 0.918
AAEL010318 Aedes aegypti AAEL010318 I 0.731
AAH52100 Xenopus laevis AAH52100 I 0.921
AAH71118 Xenopus laevis AAH71118 I 0.824
AAH72110 Xenopus laevis AAH72110 I 0.925
AAH73435 Xenopus laevis AAH73435 I 0.878
AAH80020 Xenopus laevis AAH80020 I 0.821
AAI08463 Xenopus laevis AAI08463 I 0.925
AAK29408 Xenopus laevis AAK29408 I 0.821
AGAP011092 Anopheles gambiae AGAP011092 I 0.739
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.749
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.749
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.749
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.950
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.789
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.792
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.704
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.756
CAA40721 Xenopus laevis CAA40721 I 0.921
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.735
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.735
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.842
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.857
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.721
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.828
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.975
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.978
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.721
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.717
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.896
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.978
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.860
ENSMICG00000009121 Microcebus murinus ENSMICG00000009121 I 0.785
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.824
ENSMLUG00000012245 Myotis lucifugus ENSMLUG00000012245 I 0.778
ENSMODG00000012040 Monodelphis domestica ENSMODG00000012040 I 0.785
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.975
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.867
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.978
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.978
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.978
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.900
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.857
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.928
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.774
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.978
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.978
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.978
ENSTBEG00000009320 Tupaia belangeri ENSTBEG00000009320 I 0.711
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.914
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.910
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.978
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.742
estExt_Genewise1.C_sca_1150143 Lottia gigantea estExt_Genewise1.C_sca_1150143 I 0.710
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.735
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.728
e_gw1.7.538.1 Trichoplax adhaerens e_gw1.7.538.1 I 0.704
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.711
GI18654 Drosophila mojavensis FBgn0141393 I 0.704
GK19652 Drosophila willistoni FBgn0221650 I 0.704
Gm10110 Mus musculus ENSMUSG00000062093 I 0.853
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.735
ISCW014211 Ixodes scapularis ISCW014211 I 0.736
LOC100054235 Equus caballus ENSECAG00000009396 I 0.860
LOC100056021 Equus caballus ENSECAG00000020699 I 0.878
LOC100070836 Equus caballus ENSECAG00000022681 I 0.771
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.946
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.978
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.728
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.728
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.728
P20965 Xenopus laevis P20965 I 0.921
PABPC1 Homo sapiens ENSG00000070756 D 0.978
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.975
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.975
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.978
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.943
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.975
pabpc1a Danio rerio ENSDARG00000017219 I 0.925
pabpc1b Danio rerio ENSDARG00000021140 I 0.911
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.810
PABPC1L Spermophilus tridecemlineatus ENSSTOG00000003739 I 0.731
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.774
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.785
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.760
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.756
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.799
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.771
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.832
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.771
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.792
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.774
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.832
PABPC1L Homo sapiens ENSG00000101104 I 0.774
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.771
PABPC1L Bos taurus ENSBTAG00000016849 I 0.792
pabpc1l Danio rerio ENSDARG00000002597 I 0.810
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.771
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.763
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.781
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.835
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.785
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.781
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.842
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.778
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.789
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.746
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.806
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.738
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.778
PABPC1L Gallus gallus ENSGALG00000004123 I 0.839
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.767
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.889
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.889
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.925
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.925
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.925
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.910
PABPC3 Homo sapiens ENSG00000151846 D 0.914
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.928
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.895
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.849
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.864
pabpc4 Danio rerio ENSDARG00000059259 I 0.860
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.860
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.860
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.857
PABPC4 Gallus gallus ENSGALG00000003800 I 0.871
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.849
PABPC4 Homo sapiens ENSG00000090621 D 0.857
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.853
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.864
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.860
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.860
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.814
PABPC4 Otolemur garnettii ENSOGAG00000004067 I 0.724
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.860
PABPC4 Spermophilus tridecemlineatus ENSSTOG00000010416 I 0.728
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.857
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.771
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.871
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.849
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.849
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.907
PHUM617090 Pediculus humanus PHUM617090 I 0.739
Q2VIP1_9PRIM Gorilla gorilla ENSGGOG00000006785 I 0.813
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.918
Q6GR16 Xenopus laevis Q6GR16 I 0.824
Q6IP09 Xenopus laevis Q6IP09 I 0.925
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.853
Q98SP8 Xenopus laevis Q98SP8 I 0.821
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.861
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.925
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.839
XM_001379460.1 Monodelphis domestica ENSMODG00000015024 I 0.746
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.715
XP_002156904.1 Hydra magnipapillata XP_002156904.1 I 0.704
XP_002156940.1 Hydra magnipapillata XP_002156940.1 I 0.704
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.715
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.975
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.968