CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ppa008913m
(
Prunus persica
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ppa008913m
T58399_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ppa008913m
RRM
135
205
LYVGNLPYDVDSEKLAHIFNEAGVVEIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVQLFHRYDIGGRLLT
ppa008913m
RRM
229
299
IYVGNLPWQVDDSRLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTFSSETEVDDAIAALDGQSLDGRSIR
Links
Other
RRM
family RBPs
Other
Prunus persica
RBPs
39 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AGAP004592
Anopheles gambiae
AGAP004592
I
0.000
GD18918
Drosophila simulans
FBgn0190429
N
0.000
GG19774
Drosophila erecta
FBgn0111975
N
0.000
GM24119
Drosophila sechellia
FBgn0178983
N
0.000
SRSF6
Erinaceus europaeus
ENSEEUG00000002324
N
0.000
SRSF6
Macaca mulatta
ENSMMUG00000006742
N
0.000
SRSF6
Monodelphis domestica
ENSMODG00000003107
I
0.000