CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSORLG00000008001
(
Oryzias latipes
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSORLG00000008001
T40154_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPA1
M312_0.6
Homo sapiens
Sequence logo not available
UAGGGW
RIP-chip
Cook et al.(2011)
560_17925491
0.893
HNRNPA1
M271_0.6
Homo sapiens
UAGGGW
SELEX
Cook et al.(2011)
23_7510636
0.893
HNRNPA1
M022_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00022
0.893
HNRNPA1L2
M023_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00023
0.871
HNRNPA2B1
M024_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00024
0.793
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSORLP00000010036
RRM
16
85
LFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYSSVQEVDAAMSARPHKVDGRVVE
ENSORLP00000010036
RRM
107
176
IFVGGIKEDTEESHLRDYFQQFGKIEVIDIMTDRNTGKKRGFAFVTFDDHDSVDRIVIQKYHTINSHNCE
ENSORLP00000010039
RRM
15
84
LFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYSSVQEVDAAMSARPHKVDGRVVE
ENSORLP00000010039
RRM
106
175
IFVGGIKEDTEESHLRDYFQQFGKIEVIDIMTDRNTGKKRGFAFVTFDDHDSVDRIVIQKYHTINSHNCE
Links
Other
RRM
family RBPs
Other
Oryzias latipes
RBPs
283 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BRUNOL4
Homo sapiens
ENSG00000101489
D
0.000
BRUNOL6
Homo sapiens
ENSG00000140488
D
0.000
unc-75
Caenorhabditis elegans
C17D12.2
D
0.000
BRUNOL5
Homo sapiens
ENSG00000161082
D
0.000
CELF5
Pan troglodytes
ENSPTRG00000010259
I
0.000
CELF6
Pan troglodytes
ENSPTRG00000034360
I
0.000
CELF6
Pteropus vampyrus
ENSPVAG00000006406
I
0.000
CELF4
Pteropus vampyrus
ENSPVAG00000009204
I
0.000
CELF5
Pteropus vampyrus
ENSPVAG00000014619
I
0.000
Brunol6
Rattus norvegicus
ENSRNOG00000010817
I
0.000
Brunol4
Rattus norvegicus
ENSRNOG00000014503
I
0.000
D4A916_RAT
Rattus norvegicus
ENSRNOG00000020875
I
0.000
CELF6
Sus scrofa
ENSSSCG00000001928
I
0.000
CELF3
Pan troglodytes
ENSPTRG00000001293
I
0.000
ENSPPYG00000009118
Pongo pygmaeus
ENSPPYG00000009118
I
0.000
ENSPPYG00000006615
Pongo pygmaeus
ENSPPYG00000006615
I
0.000
B7NZE2_RABIT
Oryctolagus cuniculus
ENSOCUG00000003551
I
0.000
CELF6
Oryctolagus cuniculus
ENSOCUG00000021663
I
0.000
CELF4
Oryctolagus cuniculus
ENSOCUG00000024790
I
0.000
CELF4
Otolemur garnettii
ENSOGAG00000010018
I
0.000
CELF3
Ochotona princeps
ENSOPRG00000011130
I
0.000
CELF4
Ochotona princeps
ENSOPRG00000014415
I
0.000
CELF3
Oryzias latipes
ENSORLG00000002630
I
0.000
CELF5
Oryzias latipes
ENSORLG00000004600
I
0.000
CELF4
Oryzias latipes
ENSORLG00000008913
I
0.000
CELF3
Oryzias latipes
ENSORLG00000010447
I
0.000
CELF3
Procavia capensis
ENSPCAG00000001623
I
0.000
CELF6
Ornithorhynchus anatinus
ENSOANG00000011308
I
0.000
CELF3
Sus scrofa
ENSSSCG00000006618
I
0.000
CELF5
Sus scrofa
ENSSSCG00000013476
I
0.000
Ame_R007421
Ailuropoda melanoleuca
Ame_R007421
I
0.000
Ame_R007822
Ailuropoda melanoleuca
Ame_R007822
I
0.000
Ame_R011948
Ailuropoda melanoleuca
Ame_R011948
I
0.000
XP_001192920.1
Strongylocentrotus purpuratus
XP_001192920.1
I
0.000
XP_781047.2
Strongylocentrotus purpuratus
XP_781047.2
I
0.000
AAA81375
Xenopus laevis
AAA81375
I
0.000
AAH46942
Xenopus laevis
AAH46942
I
0.000
AAH57704
Xenopus laevis
AAH57704
I
0.000
AAH72134
Xenopus laevis
AAH72134
I
0.000
ACH69784
Xenopus laevis
ACH69784
I
0.000
ACH69785
Xenopus laevis
ACH69785
I
0.000
Q91579
Xenopus laevis
Q91579
I
0.000
estExt_Genewise1Plus.C_6380019
Capitella teleta
estExt_Genewise1Plus.C_6380019
I
0.000
celf4
Xenopus tropicalis
ENSXETG00000020486
I
0.000
CELF4
Tupaia belangeri
ENSTBEG00000010647
I
0.000
BRUNOL5
Taeniopygia guttata
ENSTGUG00000000514
I
0.000
CELF3
Tetraodon nigroviridis
ENSTNIG00000008062
I
0.000
CELF4
Tetraodon nigroviridis
ENSTNIG00000010679
I
0.000
CELF6
Takifugu rubripes
ENSTRUG00000012391
I
0.000
CELF3
Takifugu rubripes
ENSTRUG00000014225
I
0.000
CELF4
Takifugu rubripes
ENSTRUG00000015481
I
0.000
CELF6
Tursiops truncatus
ENSTTRG00000002503
I
0.000
CELF5
Tursiops truncatus
ENSTTRG00000009625
I
0.000
CELF4
Tursiops truncatus
ENSTTRG00000016826
I
0.000
celf5
Xenopus tropicalis
ENSXETG00000014344
I
0.000
Q7ZWM3
Xenopus laevis
Q7ZWM3
I
0.000
Bm1_27610
Brugia malayi
Bm1_27610
I
0.000
ENSCSAVG00000007538
Ciona savignyi
ENSCSAVG00000007538
I
0.000
CELF3
Danio rerio
ENSDARG00000006983
I
0.000
celf3
Danio rerio
ENSDARG00000034668
I
0.000
celf4
Danio rerio
ENSDARG00000070045
I
0.000
celf5
Danio rerio
ENSDARG00000071375
I
0.000
ENSDARG00000076682
Danio rerio
ENSDARG00000076682
I
0.000
Celf6
Dipodomys ordii
ENSDORG00000004882
I
0.000
CELF3
Equus caballus
ENSECAG00000020365
I
0.000
CELF6
Felis catus
ENSFCAG00000016249
I
0.000
CELF3
Cavia porcellus
ENSCPOG00000003539
I
0.000
LOC100386457
Callithrix jacchus
ENSCJAG00000021135
I
0.000
LOC100414308
Callithrix jacchus
ENSCJAG00000018355
I
0.000
CBG15358
Caenorhabditis briggsae
CBG15358
I
0.000
CRE09771
Caenorhabditis remanei
CRE09771
I
0.000
A6H776_BOVIN
Bos taurus
ENSBTAG00000004940
I
0.000
CELF6
Bos taurus
ENSBTAG00000014092
I
0.000
CELF3_BOVIN
Bos taurus
ENSBTAG00000019131
I
0.000
CELF3
Canis familiaris
ENSCAFG00000012794
I
0.000
CELF5
Canis familiaris
ENSCAFG00000019263
I
0.000
ENSCING00000001999
Ciona intestinalis
ENSCING00000001999
I
0.000
CELF3
Callithrix jacchus
ENSCJAG00000007857
I
0.000
CELF3
Homo sapiens
ENSG00000159409
I
0.000
CELF3
Gasterosteus aculeatus
ENSGACG00000003274
I
0.000
CELF3
Loxodonta africana
ENSLAFG00000030147
I
0.000
CELF6
Macropus eugenii
ENSMEUG00000010988
I
0.000
CELF5
Macropus eugenii
ENSMEUG00000013080
I
0.000
CELF5
Meleagris gallopavo
ENSMGAG00000001169
I
0.000
Celf4
Mus musculus
ENSMUSG00000024268
I
0.000
CELF6
Meleagris gallopavo
ENSMGAG00000001804
I
0.000
CELF4
Macaca mulatta
ENSMMUG00000006866
I
0.000
HEXA
Macaca mulatta
ENSMMUG00000010687
I
0.000
CELF3
Macaca mulatta
ENSMMUG00000016952
I
0.000
CELF3
Monodelphis domestica
ENSMODG00000018897
I
0.000
CELF4
Loxodonta africana
ENSLAFG00000021352
I
0.000
CELF6
Loxodonta africana
ENSLAFG00000020985
I
0.000
Celf6
Mus musculus
ENSMUSG00000032297
I
0.000
CELF4
Gasterosteus aculeatus
ENSGACG00000008752
I
0.000
CELF3
Gasterosteus aculeatus
ENSGACG00000011707
I
0.000
CELF6
Monodelphis domestica
ENSMODG00000001784
I
0.000
Celf3
Mus musculus
ENSMUSG00000028137
I
0.000
CELF4
Gorilla gorilla
ENSGGOG00000013920
I
0.000
CELF6
Gorilla gorilla
ENSGGOG00000015463
I
0.000
ENSGGOG00000021973
Gorilla gorilla
ENSGGOG00000021973
I
0.000
CJA22675
Caenorhabditis japonica
CJA22675
N
0.000
ACH69786
Xenopus laevis
ACH69786
N
0.000
ENSACAG00000010826
Anolis carolinensis
ENSACAG00000010826
N
0.000
LOAG_12531
Loa loa
LOAG_12531
N
0.000
CELF4
Monodelphis domestica
ENSMODG00000000306
N
0.000
ENSCAFG00000017759
Canis familiaris
ENSCAFG00000017759
N
0.000
63157
Helobdella robusta
63157
N
0.000
zgc:165603
Danio rerio
ENSDARG00000078665
N
0.000
TNRC4
Taeniopygia guttata
ENSTGUG00000001647
N
0.000
ENSGALG00000018499
Gallus gallus
ENSGALG00000018499
N
0.000
Celf4
Dipodomys ordii
ENSDORG00000007169
N
0.000
CELF4
Sus scrofa
ENSSSCG00000003748
N
0.000
fgenesh2_pg.C_sca_131000025
Lottia gigantea
fgenesh2_pg.C_sca_131000025
N
0.000