ENSORLG00000008001 (Oryzias latipes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSORLG00000008001 T40154_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.893
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.893
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.893
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.871
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.793
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000010036 RRM 16 85
ENSORLP00000010036 RRM 107 176
ENSORLP00000010039 RRM 15 84
ENSORLP00000010039 RRM 106 175

Links

Other RRM family RBPs
Other Oryzias latipes RBPs

283 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BRUNOL4 Homo sapiens ENSG00000101489 D 0.000
BRUNOL6 Homo sapiens ENSG00000140488 D 0.000
unc-75 Caenorhabditis elegans C17D12.2 D 0.000
BRUNOL5 Homo sapiens ENSG00000161082 D 0.000
CELF5 Pan troglodytes ENSPTRG00000010259 I 0.000
CELF6 Pan troglodytes ENSPTRG00000034360 I 0.000
CELF6 Pteropus vampyrus ENSPVAG00000006406 I 0.000
CELF4 Pteropus vampyrus ENSPVAG00000009204 I 0.000
CELF5 Pteropus vampyrus ENSPVAG00000014619 I 0.000
Brunol6 Rattus norvegicus ENSRNOG00000010817 I 0.000
Brunol4 Rattus norvegicus ENSRNOG00000014503 I 0.000
D4A916_RAT Rattus norvegicus ENSRNOG00000020875 I 0.000
CELF6 Sus scrofa ENSSSCG00000001928 I 0.000
CELF3 Pan troglodytes ENSPTRG00000001293 I 0.000
ENSPPYG00000009118 Pongo pygmaeus ENSPPYG00000009118 I 0.000
ENSPPYG00000006615 Pongo pygmaeus ENSPPYG00000006615 I 0.000
B7NZE2_RABIT Oryctolagus cuniculus ENSOCUG00000003551 I 0.000
CELF6 Oryctolagus cuniculus ENSOCUG00000021663 I 0.000
CELF4 Oryctolagus cuniculus ENSOCUG00000024790 I 0.000
CELF4 Otolemur garnettii ENSOGAG00000010018 I 0.000
CELF3 Ochotona princeps ENSOPRG00000011130 I 0.000
CELF4 Ochotona princeps ENSOPRG00000014415 I 0.000
CELF3 Oryzias latipes ENSORLG00000002630 I 0.000
CELF5 Oryzias latipes ENSORLG00000004600 I 0.000
CELF4 Oryzias latipes ENSORLG00000008913 I 0.000
CELF3 Oryzias latipes ENSORLG00000010447 I 0.000
CELF3 Procavia capensis ENSPCAG00000001623 I 0.000
CELF6 Ornithorhynchus anatinus ENSOANG00000011308 I 0.000
CELF3 Sus scrofa ENSSSCG00000006618 I 0.000
CELF5 Sus scrofa ENSSSCG00000013476 I 0.000
Ame_R007421 Ailuropoda melanoleuca Ame_R007421 I 0.000
Ame_R007822 Ailuropoda melanoleuca Ame_R007822 I 0.000
Ame_R011948 Ailuropoda melanoleuca Ame_R011948 I 0.000
XP_001192920.1 Strongylocentrotus purpuratus XP_001192920.1 I 0.000
XP_781047.2 Strongylocentrotus purpuratus XP_781047.2 I 0.000
AAA81375 Xenopus laevis AAA81375 I 0.000
AAH46942 Xenopus laevis AAH46942 I 0.000
AAH57704 Xenopus laevis AAH57704 I 0.000
AAH72134 Xenopus laevis AAH72134 I 0.000
ACH69784 Xenopus laevis ACH69784 I 0.000
ACH69785 Xenopus laevis ACH69785 I 0.000
Q91579 Xenopus laevis Q91579 I 0.000
estExt_Genewise1Plus.C_6380019 Capitella teleta estExt_Genewise1Plus.C_6380019 I 0.000
celf4 Xenopus tropicalis ENSXETG00000020486 I 0.000
CELF4 Tupaia belangeri ENSTBEG00000010647 I 0.000
BRUNOL5 Taeniopygia guttata ENSTGUG00000000514 I 0.000
CELF3 Tetraodon nigroviridis ENSTNIG00000008062 I 0.000
CELF4 Tetraodon nigroviridis ENSTNIG00000010679 I 0.000
CELF6 Takifugu rubripes ENSTRUG00000012391 I 0.000
CELF3 Takifugu rubripes ENSTRUG00000014225 I 0.000
CELF4 Takifugu rubripes ENSTRUG00000015481 I 0.000
CELF6 Tursiops truncatus ENSTTRG00000002503 I 0.000
CELF5 Tursiops truncatus ENSTTRG00000009625 I 0.000
CELF4 Tursiops truncatus ENSTTRG00000016826 I 0.000
celf5 Xenopus tropicalis ENSXETG00000014344 I 0.000
Q7ZWM3 Xenopus laevis Q7ZWM3 I 0.000
Bm1_27610 Brugia malayi Bm1_27610 I 0.000
ENSCSAVG00000007538 Ciona savignyi ENSCSAVG00000007538 I 0.000
CELF3 Danio rerio ENSDARG00000006983 I 0.000
celf3 Danio rerio ENSDARG00000034668 I 0.000
celf4 Danio rerio ENSDARG00000070045 I 0.000
celf5 Danio rerio ENSDARG00000071375 I 0.000
ENSDARG00000076682 Danio rerio ENSDARG00000076682 I 0.000
Celf6 Dipodomys ordii ENSDORG00000004882 I 0.000
CELF3 Equus caballus ENSECAG00000020365 I 0.000
CELF6 Felis catus ENSFCAG00000016249 I 0.000
CELF3 Cavia porcellus ENSCPOG00000003539 I 0.000
LOC100386457 Callithrix jacchus ENSCJAG00000021135 I 0.000
LOC100414308 Callithrix jacchus ENSCJAG00000018355 I 0.000
CBG15358 Caenorhabditis briggsae CBG15358 I 0.000
CRE09771 Caenorhabditis remanei CRE09771 I 0.000
A6H776_BOVIN Bos taurus ENSBTAG00000004940 I 0.000
CELF6 Bos taurus ENSBTAG00000014092 I 0.000
CELF3_BOVIN Bos taurus ENSBTAG00000019131 I 0.000
CELF3 Canis familiaris ENSCAFG00000012794 I 0.000
CELF5 Canis familiaris ENSCAFG00000019263 I 0.000
ENSCING00000001999 Ciona intestinalis ENSCING00000001999 I 0.000
CELF3 Callithrix jacchus ENSCJAG00000007857 I 0.000
CELF3 Homo sapiens ENSG00000159409 I 0.000
CELF3 Gasterosteus aculeatus ENSGACG00000003274 I 0.000
CELF3 Loxodonta africana ENSLAFG00000030147 I 0.000
CELF6 Macropus eugenii ENSMEUG00000010988 I 0.000
CELF5 Macropus eugenii ENSMEUG00000013080 I 0.000
CELF5 Meleagris gallopavo ENSMGAG00000001169 I 0.000
Celf4 Mus musculus ENSMUSG00000024268 I 0.000
CELF6 Meleagris gallopavo ENSMGAG00000001804 I 0.000
CELF4 Macaca mulatta ENSMMUG00000006866 I 0.000
HEXA Macaca mulatta ENSMMUG00000010687 I 0.000
CELF3 Macaca mulatta ENSMMUG00000016952 I 0.000
CELF3 Monodelphis domestica ENSMODG00000018897 I 0.000
CELF4 Loxodonta africana ENSLAFG00000021352 I 0.000
CELF6 Loxodonta africana ENSLAFG00000020985 I 0.000
Celf6 Mus musculus ENSMUSG00000032297 I 0.000
CELF4 Gasterosteus aculeatus ENSGACG00000008752 I 0.000
CELF3 Gasterosteus aculeatus ENSGACG00000011707 I 0.000
CELF6 Monodelphis domestica ENSMODG00000001784 I 0.000
Celf3 Mus musculus ENSMUSG00000028137 I 0.000
CELF4 Gorilla gorilla ENSGGOG00000013920 I 0.000
CELF6 Gorilla gorilla ENSGGOG00000015463 I 0.000
ENSGGOG00000021973 Gorilla gorilla ENSGGOG00000021973 I 0.000
CJA22675 Caenorhabditis japonica CJA22675 N 0.000
ACH69786 Xenopus laevis ACH69786 N 0.000
ENSACAG00000010826 Anolis carolinensis ENSACAG00000010826 N 0.000
LOAG_12531 Loa loa LOAG_12531 N 0.000
CELF4 Monodelphis domestica ENSMODG00000000306 N 0.000
ENSCAFG00000017759 Canis familiaris ENSCAFG00000017759 N 0.000
63157 Helobdella robusta 63157 N 0.000
zgc:165603 Danio rerio ENSDARG00000078665 N 0.000
TNRC4 Taeniopygia guttata ENSTGUG00000001647 N 0.000
ENSGALG00000018499 Gallus gallus ENSGALG00000018499 N 0.000
Celf4 Dipodomys ordii ENSDORG00000007169 N 0.000
CELF4 Sus scrofa ENSSSCG00000003748 N 0.000
fgenesh2_pg.C_sca_131000025 Lottia gigantea fgenesh2_pg.C_sca_131000025 N 0.000