ENSTNIG00000009153 (Tetraodon nigroviridis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTNIG00000009153 T42065_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.935
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.935
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.935
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.871
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.842
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000012014 RRM 13 83
ENSTNIP00000012014 RRM 101 169
ENSTNIP00000012014 RRM 193 262
ENSTNIP00000012014 RRM 296 364

Links

Other RRM family RBPs
Other Tetraodon nigroviridis RBPs

164 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPC3 Homo sapiens ENSG00000151846 D 0.871
PABPC4 Homo sapiens ENSG00000090621 D 0.842
PABPC1 Homo sapiens ENSG00000070756 D 0.935
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.860
PABPC4 Spermophilus tridecemlineatus ENSSTOG00000010416 I 0.713
PABPC1L Spermophilus tridecemlineatus ENSSTOG00000003739 I 0.720
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.796
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.935
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.846
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.832
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.875
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.928
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.814
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.932
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.895
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.846
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.767
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.996
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.849
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.839
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.853
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.871
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.749
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.756
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.853
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.809
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.910
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.921
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.846
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.785
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.935
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.842
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.885
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.781
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.932
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.935
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.785
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.875
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.932
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.778
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.842
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.935
PABPC4 Otolemur garnettii ENSOGAG00000004067 I 0.713
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.914
AAH52100 Xenopus laevis AAH52100 I 0.921
AAA60936 Xenopus laevis AAA60936 I 0.918
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.722
XP_002156940.1 Hydra magnipapillata XP_002156940.1 I 0.718
XP_002156904.1 Hydra magnipapillata XP_002156904.1 I 0.718
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.722
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.781
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.799
AAH71118 Xenopus laevis AAH71118 I 0.824
AAH72110 Xenopus laevis AAH72110 I 0.914
Q6IP09 Xenopus laevis Q6IP09 I 0.914
Q6GR16 Xenopus laevis Q6GR16 I 0.824
P20965 Xenopus laevis P20965 I 0.921
CAA40721 Xenopus laevis CAA40721 I 0.921
AAK29408 Xenopus laevis AAK29408 I 0.832
AAI08463 Xenopus laevis AAI08463 I 0.914
AAH80020 Xenopus laevis AAH80020 I 0.832
AAH73435 Xenopus laevis AAH73435 I 0.871
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.914
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.777
GH21052 Drosophila grimshawi FBgn0128514 I 0.704
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.810
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.810
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.928
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.760
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.935
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.781
ISCW014211 Ixodes scapularis ISCW014211 I 0.764
PHUM617090 Pediculus humanus PHUM617090 I 0.756
185682 Helobdella robusta 185682 I 0.731
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.760
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.725
estExt_Genewise1.C_sca_1150143 Lottia gigantea estExt_Genewise1.C_sca_1150143 I 0.717
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.756
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.760
e_gw1.7.538.1 Trichoplax adhaerens e_gw1.7.538.1 I 0.715
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.735
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.736
Q98SP8 Xenopus laevis Q98SP8 I 0.832
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.935
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.763
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.746
ENSCSAVG00000003102 Ciona savignyi ENSCSAVG00000003102 I 0.717
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.774
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.849
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.907
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.774
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.935
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.842
pabpc1l Danio rerio ENSDARG00000002597 I 0.817
pabpc1a Danio rerio ENSDARG00000017219 I 0.939
PABPC1L Homo sapiens ENSG00000101104 I 0.781
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.774
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.839
LOC100070836 Equus caballus ENSECAG00000022681 I 0.781
LOC100056021 Equus caballus ENSECAG00000020699 I 0.817
LOC100054235 Equus caballus ENSECAG00000009396 I 0.846
pabpc4 Danio rerio ENSDARG00000059259 I 0.857
pabpc1b Danio rerio ENSDARG00000021140 I 0.950
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.753
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.792
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.742
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.742
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.742
DGIL_AUG5s9152g1t1 Acyrtosiphon pisum DGIL_AUG5s9152g1t1 I 0.721
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.742
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.763
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.763
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.763
AAEL010318 Aedes aegypti AAEL010318 I 0.760
AGAP011092 Anopheles gambiae AGAP011092 I 0.763
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.846
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.935
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.846
PABPC1L Bos taurus ENSBTAG00000016849 I 0.799
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.932
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.832
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.806
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.763
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.832
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.935
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.857
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.882
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.803
XM_001379460.1 Monodelphis domestica ENSMODG00000015024 I 0.731
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.821
ENSMODG00000012040 Monodelphis domestica ENSMODG00000012040 I 0.728
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.925
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.885
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.839
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.932
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.796
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.849
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.864
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.932
Gm10110 Mus musculus ENSMUSG00000062093 I 0.842
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.753
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.871
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.867
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.935
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.785
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.846
Q2VIP1_9PRIM Gorilla gorilla ENSGGOG00000006785 I 0.761
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.781
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.842
PABPC1L Gallus gallus ENSGALG00000004123 I 0.842
PABPC4 Gallus gallus ENSGALG00000003800 I 0.867
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.849
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.957
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.785
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.935
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.846
ENSMLUG00000012245 Myotis lucifugus ENSMLUG00000012245 I 0.742
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.810
ENSMICG00000009121 Microcebus murinus ENSMICG00000009121 I 0.789
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.774
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.846
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.846
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.781
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.935