ENSTRUG00000003767 (Takifugu rubripes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTRUG00000003767 T42220_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.932
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.932
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.932
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.867
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.842
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000008848 RRM 13 83
ENSTRUP00000008848 RRM 101 169
ENSTRUP00000008848 RRM 193 262
ENSTRUP00000008848 RRM 296 364

Links

Other RRM family RBPs
Other Takifugu rubripes RBPs

164 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29629.m001443 Ricinus communis 29629.m001443 N 0.000
A9P9S1_POPTR Populus trichocarpa POPTR_0017s08570 N 0.000
A9PGV5_POPTR Populus trichocarpa POPTR_0001s32720 N 0.000
B9P731_POPTR Populus trichocarpa POPTR_0323s00210 N 0.000
cassava7020.valid.m1 Manihot esculenta cassava7020.valid.m1 N 0.000
GSVIVG00021024001 Vitis vinifera GSVIVG00021024001 N 0.000
PK23911.1 Cannabis sativa PK23911.1 N 0.000