ECT1 (Arabidopsis thaliana)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 AT3G03950-TAIR-G T61931_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT3G03950.1-P YTH 292 382
AT3G03950.2-P YTH 291 381
AT3G03950.3-P YTH 295 385

Links

Other YTH family RBPs
Other Arabidopsis thaliana RBPs

160 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.813
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.000
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.802
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.989
XM_002864508.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001450 N 0.000
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.703
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.725
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.758
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.725
ECT10 Arabidopsis thaliana AT5G58190-TAIR-G N 0.000
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.000
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.813
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.758
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.791
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.703
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.802
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.725
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.714
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.725
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.714
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.747
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.725
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.000
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.714
PK01736.1 Cannabis sativa PK01736.1 N 0.714
PK23716.1 Cannabis sativa PK23716.1 N 0.835
PK02315.1 Cannabis sativa PK02315.1 N 0.000
PK05579.1 Cannabis sativa PK05579.1 N 0.000
PK17832.1 Cannabis sativa PK17832.1 N 0.747
PK23104.1 Cannabis sativa PK23104.1 N 0.725
PK26094.1 Cannabis sativa PK26094.1 N 0.000
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.714
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.791
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.000
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.000
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.714
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.000
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.703
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.714
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.000
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.000
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.703
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.835
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.824
LjSGA_011466.1 Lotus japonicus LjSGA_011466.1 N 0.000
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.000
chr6.CM0885.260.nc Lotus japonicus chr6.CM0885.260.nc N 0.000
chr6.CM0885.320.nc Lotus japonicus chr6.CM0885.320.nc N 0.000
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.703
LjT10H22.120.nd Lotus japonicus LjT10H22.120.nd N 0.000
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.000
MDP0000488248 Malus x domestica MDP0000488248 N 0.000
MDP0000552419 Malus x domestica MDP0000552419 N 0.714
MDP0000256033 Malus x domestica MDP0000256033 N 0.000
MDP0000286471 Malus x domestica MDP0000286471 N 0.725
MDP0000287088 Malus x domestica MDP0000287088 N 0.714
MDP0000306387 Malus x domestica MDP0000306387 N 0.736
MDP0000718677 Malus x domestica MDP0000718677 N 0.857
MDP0000617859 Malus x domestica MDP0000617859 N 0.714
MDP0000488588 Malus x domestica MDP0000488588 N 0.780
MDP0000405927 Malus x domestica MDP0000405927 N 0.714
MDP0000248088 Malus x domestica MDP0000248088 N 0.714
MDP0000124048 Malus x domestica MDP0000124048 N 0.802
MDP0000171737 Malus x domestica MDP0000171737 N 0.747
MDP0000132385 Malus x domestica MDP0000132385 N 0.736
MDP0000129009 Malus x domestica MDP0000129009 N 0.857
MDP0000231231 Malus x domestica MDP0000231231 N 0.725
MDP0000189157 Malus x domestica MDP0000189157 N 0.000
MDP0000199885 Malus x domestica MDP0000199885 N 0.000
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.791
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.791
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.703
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.000
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.791
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.725
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.758
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.714
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.714
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.813
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.791
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.791
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.725
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.725
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.000
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.000
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.000
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.758
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.703
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.703
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.703
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.703
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.725
mgf017987m Mimulus guttatus mgf017987m N 0.000
mgf015583m Mimulus guttatus mgf015583m N 0.000
mgf019846m Mimulus guttatus mgf019846m N 0.000
mgf014143m Mimulus guttatus mgf014143m N 0.000
mgf013935m Mimulus guttatus mgf013935m N 0.791
mgf013853m Mimulus guttatus mgf013853m N 0.780
mgf009938m Mimulus guttatus mgf009938m N 0.780
mgf001716m Mimulus guttatus mgf001716m N 0.000
mgf014829m Mimulus guttatus mgf014829m N 0.000
mgf019821m Mimulus guttatus mgf019821m N 0.703
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.791
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.725
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.736
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.714
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.714
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.703
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.714
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.714
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.714
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.791
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.736
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.725
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.747
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.736
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.714
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.714
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.703
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.725
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.000
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.769
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.000
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.000
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.000
B9N0D5_POPTR Populus trichocarpa POPTR_0004s23250 N 0.000
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.703
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.736
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.736
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.736
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.714
B9N770_POPTR Populus trichocarpa POPTR_0022s00680 N 0.000
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.824
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.714
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.747
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.000
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.736
ppa002483m Prunus persica ppa002483m N 0.736
ppa018635m Prunus persica ppa018635m N 0.714
ppa003557m Prunus persica ppa003557m N 0.000
ppa002588m Prunus persica ppa002588m N 0.736
ppa002677m Prunus persica ppa002677m N 0.000
ppa003664m Prunus persica ppa003664m N 0.714
29765.m000746 Ricinus communis 29765.m000746 N 0.000
29889.m003364 Ricinus communis 29889.m003364 N 0.000
29890.m000285 Ricinus communis 29890.m000285 N 0.703
29929.m004643 Ricinus communis 29929.m004643 N 0.747
29950.m001140 Ricinus communis 29950.m001140 N 0.813
29955.m001158 Ricinus communis 29955.m001158 N 0.714
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.000
SB09G000580 Sorghum bicolor Sb09g000580 N 0.000
SB07G024500 Sorghum bicolor Sb07g024500 N 0.725
SB07G006330 Sorghum bicolor Sb07g006330 N 0.714
SB02G003990 Sorghum bicolor Sb02g003990 N 0.780
SB01G008170 Sorghum bicolor Sb01g008170 N 0.769
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.714
SB03G031190 Sorghum bicolor Sb03g031190 N 0.714
SB06G027960 Sorghum bicolor Sb06g027960 N 0.703
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.703
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.802
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.758
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.780
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.758
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.714
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.703
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.714
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.703
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.769
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.714
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.725
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.714
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.725
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.791