ECT2 (Arabidopsis thaliana)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 AT3G13460-TAIR-G T61933_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT3G13460.1-P YTH 492 582
AT3G13460.2-P YTH 489 579
AT3G13460.4-P YTH 491 581

Links

Other YTH family RBPs
Other Arabidopsis thaliana RBPs

161 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 1.000
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.736
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.714
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.725
XM_002893450.1 Arabidopsis lyrata fgenesh2_kg.1__2951__AT1G27960.1 N 0.703
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.945
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.703
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.802
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.824
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.703
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.824
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.923
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.736
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.813
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.714
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.725
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.769
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.769
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.725
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.714
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.725
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.780
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.846
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.780
PK17832.1 Cannabis sativa PK17832.1 N 0.725
PK23104.1 Cannabis sativa PK23104.1 N 0.725
PK23716.1 Cannabis sativa PK23716.1 N 0.890
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.868
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.714
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.846
Glyma19g28710.1 Glycine max Glyma19g28710.1 N 0.769
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.725
Glyma16g04590.1 Glycine max Glyma16g04590.1 N 0.769
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.736
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.714
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.835
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.703
Glyma02g07920.1 Glycine max Glyma02g07920.1 N 0.736
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.703
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.703
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.736
MDP0000132385 Malus x domestica MDP0000132385 N 0.747
MDP0000718677 Malus x domestica MDP0000718677 N 0.890
MDP0000617859 Malus x domestica MDP0000617859 N 0.714
MDP0000552419 Malus x domestica MDP0000552419 N 0.714
MDP0000488588 Malus x domestica MDP0000488588 N 0.857
MDP0000405927 Malus x domestica MDP0000405927 N 0.714
MDP0000129009 Malus x domestica MDP0000129009 N 0.879
MDP0000306387 Malus x domestica MDP0000306387 N 0.747
MDP0000287088 Malus x domestica MDP0000287088 N 0.714
MDP0000124048 Malus x domestica MDP0000124048 N 0.890
MDP0000171737 Malus x domestica MDP0000171737 N 0.725
MDP0000231231 Malus x domestica MDP0000231231 N 0.725
MDP0000248088 Malus x domestica MDP0000248088 N 0.714
MDP0000286471 Malus x domestica MDP0000286471 N 0.725
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.901
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.890
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.890
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.890
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.769
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.901
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.901
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.736
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.736
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.736
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.901
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.901
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.901
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.703
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.736
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.736
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.901
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.901
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.901
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.901
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.901
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.901
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.901
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.901
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.901
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.901
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.703
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.923
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.923
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.923
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.923
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.725
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.725
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.901
Medtr7g100450 Medicago truncatula Medtr7g100450 N 0.802
Medtr6g030800 Medicago truncatula Medtr6g030800 N 0.758
Medtr6g030790 Medicago truncatula Medtr6g030790 N 0.758
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.703
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.824
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.703
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.703
mgf019821m Mimulus guttatus mgf019821m N 0.714
mgf017987m Mimulus guttatus mgf017987m N 0.714
mgf009938m Mimulus guttatus mgf009938m N 0.868
mgf013853m Mimulus guttatus mgf013853m N 0.868
mgf015583m Mimulus guttatus mgf015583m N 0.703
mgf013935m Mimulus guttatus mgf013935m N 0.857
mgf014143m Mimulus guttatus mgf014143m N 0.703
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.758
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.725
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.791
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.714
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.813
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.769
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.791
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.813
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.758
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.769
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.725
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.758
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.791
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.824
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.703
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.714
B9GLB9_POPTR Populus trichocarpa POPTR_0001s03940 N 0.736
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.725
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.725
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.725
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.813
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.714
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.736
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.868
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.714
ppa003664m Prunus persica ppa003664m N 0.725
ppa002483m Prunus persica ppa002483m N 0.703
ppa018635m Prunus persica ppa018635m N 0.725
ppa002588m Prunus persica ppa002588m N 0.703
29889.m003364 Ricinus communis 29889.m003364 N 0.714
29890.m000285 Ricinus communis 29890.m000285 N 0.725
29929.m004643 Ricinus communis 29929.m004643 N 0.703
30169.m006347 Ricinus communis 30169.m006347 N 0.747
29950.m001140 Ricinus communis 29950.m001140 N 0.758
29955.m001158 Ricinus communis 29955.m001158 N 0.703
SB07G024500 Sorghum bicolor Sb07g024500 N 0.780
SB07G006330 Sorghum bicolor Sb07g006330 N 0.769
SB06G027960 Sorghum bicolor Sb06g027960 N 0.780
SB03G031190 Sorghum bicolor Sb03g031190 N 0.714
SB01G005500 Sorghum bicolor Sb01g005500 N 0.802
SB01G008170 Sorghum bicolor Sb01g008170 N 0.835
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.791
SB02G003990 Sorghum bicolor Sb02g003990 N 0.824
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.857
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.725
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.736
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.714
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.802
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.714
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.835
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.703
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.835
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.714
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.791
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.791
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.758
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.769