Medtr2g085380 (Medicago truncatula)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 Medtr2g085380 T62452_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr2g085380.1 YTH 428 518
Medtr2g085380.2 YTH 321 411

Links

Other YTH family RBPs
Other Medicago truncatula RBPs

137 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29765.m000746 Ricinus communis 29765.m000746 N 0.791
29889.m003364 Ricinus communis 29889.m003364 N 0.791
29890.m000285 Ricinus communis 29890.m000285 N 0.703
29929.m004643 Ricinus communis 29929.m004643 N 0.758
29955.m001158 Ricinus communis 29955.m001158 N 0.890
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.780
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.802
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.901
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.791
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.780
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.912
B9N0D5_POPTR Populus trichocarpa POPTR_0004s23250 N 0.769
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.791
B9N770_POPTR Populus trichocarpa POPTR_0022s00680 N 0.758
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.747
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.846
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.747
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.725
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.747
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.780
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.758
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.736
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.714
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.835
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.747
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.747
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.725
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.703
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.736
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.758
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.769
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.769
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.769
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.769
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.879
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.879
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.802
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.802
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.802
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.802
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.802
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.769
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.780
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.791
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.780
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.725
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.703
ECT10 Arabidopsis thaliana AT5G58190-TAIR-G N 0.703
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.802
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.714
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.736
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.868
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.791
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.791
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.934
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.791
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.791
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.780
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.934
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.813
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.769
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.725
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.703
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.824
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.824
GRMZM2G303312 Zea mays GRMZM2G303312 N 0.703
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.714
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.780
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.769
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.824
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.758
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.791
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.703
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.736
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.923
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.758
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.824
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.802
LjSGA_011466.1 Lotus japonicus LjSGA_011466.1 N 0.703
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.934
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.846
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.747
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.703
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.769
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.747
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.780
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.758
MDP0000132385 Malus x domestica MDP0000132385 N 0.758
MDP0000171737 Malus x domestica MDP0000171737 N 0.923
MDP0000231231 Malus x domestica MDP0000231231 N 0.901
MDP0000248088 Malus x domestica MDP0000248088 N 0.813
MDP0000256033 Malus x domestica MDP0000256033 N 0.802
MDP0000286471 Malus x domestica MDP0000286471 N 0.901
MDP0000287088 Malus x domestica MDP0000287088 N 0.824
MDP0000306387 Malus x domestica MDP0000306387 N 0.758
MDP0000405927 Malus x domestica MDP0000405927 N 0.824
MDP0000488248 Malus x domestica MDP0000488248 N 0.802
MDP0000552419 Malus x domestica MDP0000552419 N 0.813
MDP0000617859 Malus x domestica MDP0000617859 N 0.824
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.813
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.802
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.813
mgf001716m Mimulus guttatus mgf001716m N 0.769
mgf014143m Mimulus guttatus mgf014143m N 0.758
mgf014829m Mimulus guttatus mgf014829m N 0.769
mgf015583m Mimulus guttatus mgf015583m N 0.758
mgf017987m Mimulus guttatus mgf017987m N 0.758
mgf019821m Mimulus guttatus mgf019821m N 0.725
mgf019846m Mimulus guttatus mgf019846m N 0.769
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.714
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.791
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.846
PK01736.1 Cannabis sativa PK01736.1 N 0.758
PK02315.1 Cannabis sativa PK02315.1 N 0.802
PK05579.1 Cannabis sativa PK05579.1 N 0.725
PK17832.1 Cannabis sativa PK17832.1 N 0.780
PK23104.1 Cannabis sativa PK23104.1 N 0.857
PK26094.1 Cannabis sativa PK26094.1 N 0.802
ppa002483m Prunus persica ppa002483m N 0.802
ppa002588m Prunus persica ppa002588m N 0.802
ppa002677m Prunus persica ppa002677m N 0.714
ppa003557m Prunus persica ppa003557m N 0.780
ppa003664m Prunus persica ppa003664m N 0.923
ppa018635m Prunus persica ppa018635m N 0.791
SB01G008170 Sorghum bicolor Sb01g008170 N 0.703
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.725
SB03G031190 Sorghum bicolor Sb03g031190 N 0.824
SB06G027960 Sorghum bicolor Sb06g027960 N 0.714
SB07G006330 Sorghum bicolor Sb07g006330 N 0.769
SB07G024500 Sorghum bicolor Sb07g024500 N 0.769
SB09G000580 Sorghum bicolor Sb09g000580 N 0.703
XM_002864508.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001450 N 0.703
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.802
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.725
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.857
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.736