CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Medtr2g085380
(
Medicago truncatula
)
YTH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF04146 (YTH)
IPR007275
Medtr2g085380
T62452_0.6
PlantGDB (2010-Oct-15)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Medtr2g085380.1
YTH
428
518
LFFSVNASGQFCGVAEMIGRVDFNKSMDFWQQDKWNGYFPVKWHIIKDIPNPQLRHIILENNDHKPVTNSRDTQEIHFPQGIEMLNIFKNY
Medtr2g085380.2
YTH
321
411
LFFSVNASGQFCGVAEMIGRVDFNKSMDFWQQDKWNGYFPVKWHIIKDIPNPQLRHIILENNDHKPVTNSRDTQEIHFPQGIEMLNIFKNY
Links
Other
YTH
family RBPs
Other
Medicago truncatula
RBPs
137 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GH20357
Drosophila grimshawi
FBgn0127820
N
0.000
GL16773
Drosophila persimilis
FBgn0154377
N
0.000
GA17545-RA
Drosophila pseudoobscura
FBgn0077556
N
0.000
GK21670
Drosophila willistoni
FBgn0223655
N
0.000