ENSRNOG00000021280 (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000021280 T41145_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.901
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.901
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.901
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.879
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.730
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000034481 RRM 2 71
ENSRNOP00000034481 RRM 93 162

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

243 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAA49741 Xenopus laevis AAA49741 I 0.830
AAA49742 Xenopus laevis AAA49742 I 0.830
AAH45260 Xenopus laevis AAH45260 I 0.844
AAH72090 Xenopus laevis AAH72090 I 0.844
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.901
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.836
CBF67555 Xenopus laevis CBF67555 I 0.830
CBF67672 Xenopus laevis CBF67672 I 0.844
CBU92428 Xenopus laevis CBU92428 I 0.830
CBU92546 Xenopus laevis CBU92546 I 0.844
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.887
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.901
LOC785445 Bos taurus ENSBTAG00000025621 I 0.871
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.741
ENSCAFG00000000746 Canis familiaris ENSCAFG00000000746 I 0.000
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.796
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.850
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.796
ENSCAFG00000003418 Canis familiaris ENSCAFG00000003418 I 0.721
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.796
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.817
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.858
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.782
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.814
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.776
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.731
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.830
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.901
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.843
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.735
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.858
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.825
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.731
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.757
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.887
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.845
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.710
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.814
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.766
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.824
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.814
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.762
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.731
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.803
ENSCAFG00000018580 Canis familiaris ENSCAFG00000018580 I 0.703
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.789
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.818
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.810
ENSCAFG00000020428 Canis familiaris ENSCAFG00000020428 I 0.000
ENSCAFG00000023056 Canis familiaris ENSCAFG00000023056 I 0.717
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.858
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.789
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.790
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.836
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.824
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.829
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.879
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.894
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.851
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.743
ENSCJAG00000005407 Callithrix jacchus ENSCJAG00000005407 I 0.721
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.836
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.879
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.837
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.879
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.857
ENSCJAG00000015222 Callithrix jacchus ENSCJAG00000015222 I 0.000
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.850
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.901
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.901
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.836
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.872
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.872
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.837
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.807
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.901
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.864
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.872
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.901
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.809
LOC100054206 Equus caballus ENSECAG00000006699 I 0.824
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.901
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.851
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.887
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.850
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.901
HNRNPA1 Homo sapiens ENSG00000135486 D 0.901
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.879
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.901
ENSG00000231942 Homo sapiens ENSG00000231942 I 0.703
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.816
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.901
ENSGGOG00000024290 Gorilla gorilla ENSGGOG00000024290 I 0.000
ENSGGOG00000025265 Gorilla gorilla ENSGGOG00000025265 I 0.800
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.887
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.836
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.821
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.887
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.894
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.851
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.859
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.782
ENSMICG00000012083 Microcebus murinus ENSMICG00000012083 I 0.000
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.901
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.824
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.887
ENSMMUG00000004182 Macaca mulatta ENSMMUG00000004182 I 0.718
ENSMMUG00000004528 Macaca mulatta ENSMMUG00000004528 I 0.703
ENSMMUG00000005750 Macaca mulatta ENSMMUG00000005750 I 0.000
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.857
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.894
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.879
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.731
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.736
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.901
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.782
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.779
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.807
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.753
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.894
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.887
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.803
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.850
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.781
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.796
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.879
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.901
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.887
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.901
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.865
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.887
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.894
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.857
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.879
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.887
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.894
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.901
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.887
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.894
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.724
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.894
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.793
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.710
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.858
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.901
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.901
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.901
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.901
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.901
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.851
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.850
ENSRNOG00000017651 Rattus norvegicus ENSRNOG00000017651 I 0.000
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.851
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.850
D3ZQR9_RAT Rattus norvegicus ENSRNOG00000027605 I 0.000
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.872
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.859
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.901
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.872
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.809
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.901
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.836
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.901
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.871
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.879
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.901
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.851
P17130 Xenopus laevis P17130 I 0.830