CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOC_Os05g01520
(
Oryza sativa
)
YTH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF04146 (YTH)
IPR007275
LOC_Os05g01520
T62231_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os05g01520.1
YTH
486
576
LFFSVNTSGQFVGLAEMLGPVDFKKTMDFWQQDKWNGFFPVMWHIIKDIPNRFFKHITLENNEGKVVTFSRDTQEIGLPQGLEMLKIFKAY
Links
Other
YTH
family RBPs
Other
Oryza sativa
RBPs
132 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AB01016.1
Alternaria brassicicola
AB01016.1
N
0.000
ARB_00799
Arthroderma benhamiae
ARB_00799
N
0.000
BC1G_02626
Botrytis cinerea
BC1G_02626
N
0.000
BDBG_01534
Blastomyces dermatitidis
BDBG_01534
N
0.000
ACLA_003080
Aspergillus clavatus
CADACLAG00000382
N
0.000
AFLA_003900
Aspergillus flavus
CADAFLAG00010456
N
0.000
AFUA_5G02160
Aspergillus fumigatus
CADAFUAG00002676
N
0.000
An02g10780
Aspergillus niger
CADANGAG00002596
N
0.000
ANIA_08055
Aspergillus nidulans
CADANIAG00004081
N
0.000
AO090102000274
Aspergillus oryzae
CADAORAG00009617
N
0.000
ATEG_09171
Aspergillus terreus
CADATEAG00003372
N
0.000
NFIA_039950
Neosartorya fischeri
CADNFIAG00002962
N
0.000
CHGG_07745
Chaetomium globosum
CHGG_07745
N
0.000
CIMG_06432
Coccidioides immitis
CIMG_06432
N
0.000
CPAG_02028
Candida parapsilosis
CPAG_02028
N
0.000
CPSG_00638
Coccidioides posadasii
CPSG_00638
N
0.000
EAT77189.2
Phaeosphaeria nodorum
EAT77189.2
N
0.000
estExt_fgenesh1_pm.C_10481
Trichoderma reesei
estExt_fgenesh1_pm.C_10481
N
0.000
estExt_fgenesh1_pm.C_30636
Myceliophthora thermophila
estExt_fgenesh1_pm.C_30636
N
0.000
estExt_fgenesh1_pm.C_chr_80348
Mycosphaerella graminicola
estExt_fgenesh1_pm.C_chr_80348
N
0.000
estExt_fgenesh2_pm.C_20549
Thielavia terrestris
estExt_fgenesh2_pm.C_20549
N
0.000
estExt_Genewise1.C_11720
Neurospora discreta
estExt_Genewise1.C_11720
N
0.000
estExt_Genewise1.C_50445
Mycosphaerella fijiensis
estExt_Genewise1.C_50445
N
0.000
estExt_Genewise1.C_70493
Cochliobolus heterostrophus C5
estExt_Genewise1.C_70493
N
0.000
estExt_Genewise1.C_sca_6_chr9_2_00515
Nectria haematococca
estExt_Genewise1.C_sca_6_chr9_2_00515
N
0.000
estExt_Genewise1Plus.C_130308
Cryphonectria parasitica
estExt_Genewise1Plus.C_130308
N
0.000
e_gw1.4.1358.1
Trichoderma virens
e_gw1.4.1358.1
N
0.000
fgenesh1_pm.00866_#_655
Aspergillus carbonarius
fgenesh1_pm.00866_#_655
N
0.000
fgenesh1_pm.C_scaffold_1000366
Trichoderma atroviride
fgenesh1_pm.C_scaffold_1000366
N
0.000
FOXG_02027
Fusarium oxysporum
FOXG_02027
N
0.000
FVEG_05191
Fusarium verticillioides
FVEG_05191
N
0.000
GLRG_04960
Colletotrichum graminicola
GLRG_04960
N
0.000
GSTUMT00003821001
Tuber melanosporum
GSTUMT00003821001
N
0.000
MCYG_02047
Microsporum canis
MCYG_02047
N
0.000
MGG_07327
Magnaporthe oryzae
MGG_07327
N
0.000
MGYG_04027
Microsporum gypseum
MGYG_04027
N
0.000
NCU06684
Neurospora crassa
NCU06684
N
0.000
PABG_00314
Paracoccidioides brasiliensis
PABG_00314
N
0.000
Pa_2_11350
Podospora anserina
Pa_2_11350
N
0.000
Pc21g14870
Penicillium chrysogenum
Pc21g14870
N
0.000
PMAA_081320
Penicillium marneffei
PMAA_081320
N
0.000
PTRG_11004
Pyrenophora tritici repentis
PTRG_11004
N
0.000
SNOG_15524
Stagonospora nodorum
SNOG_15524
N
0.000
SS1G_01772
Sclerotinia sclerotiorum
SS1G_01772
N
0.000
TEQG_06114
Trichophyton equinum
TEQG_06114
N
0.000
TERG_04360
Trichophyton rubrum
TERG_04360
N
0.000
TESG_06793
Trichophyton tonsurans
TESG_06793
N
0.000
TRV_00689
Trichophyton verrucosum
TRV_00689
N
0.000
UREG_03978
Uncinocarpus reesii
UREG_03978
N
0.000
VDAG_01381
Verticillium dahliae
VDAG_01381
N
0.000
YALI0F21835g
Yarrowia lipolytica
YALI0F21835g
N
0.000