mgf001716m (Mimulus guttatus)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 mgf001716m T62421_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
mgf001716m YTH 371 461

Links

Other YTH family RBPs
Other Mimulus guttatus RBPs

132 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.703
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.747
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.725
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.758
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.758
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.758
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.769
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.725
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.703
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.000
mgf009938m Mimulus guttatus mgf009938m N 0.703
mgf013853m Mimulus guttatus mgf013853m N 0.703
mgf013935m Mimulus guttatus mgf013935m N 0.000
mgf014143m Mimulus guttatus mgf014143m N 0.736
mgf014829m Mimulus guttatus mgf014829m N 1.000
mgf015583m Mimulus guttatus mgf015583m N 0.736
mgf019821m Mimulus guttatus mgf019821m N 0.000
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.747
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.714
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.000
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.000
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.000
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.000
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.000
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.000
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.000
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.000
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.000
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.000
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.000
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.000
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.000
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.780
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.780
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.000
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.758
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.725
mgf019846m Mimulus guttatus mgf019846m N 0.868
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.714
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.725
MDP0000248088 Malus x domestica MDP0000248088 N 0.736
MDP0000256033 Malus x domestica MDP0000256033 N 0.835
MDP0000286471 Malus x domestica MDP0000286471 N 0.780
MDP0000287088 Malus x domestica MDP0000287088 N 0.747
MDP0000306387 Malus x domestica MDP0000306387 N 0.725
MDP0000405927 Malus x domestica MDP0000405927 N 0.747
MDP0000488248 Malus x domestica MDP0000488248 N 0.824
MDP0000488588 Malus x domestica MDP0000488588 N 0.000
MDP0000552419 Malus x domestica MDP0000552419 N 0.736
MDP0000617859 Malus x domestica MDP0000617859 N 0.747
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.736
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.758
PDK_20s1906441g001 Phoenix dactylifera PDK_20s1906441g001 N 0.000
ppa002483m Prunus persica ppa002483m N 0.725
ppa002588m Prunus persica ppa002588m N 0.725
ppa003557m Prunus persica ppa003557m N 0.824
ppa003664m Prunus persica ppa003664m N 0.780
MDP0000231231 Malus x domestica MDP0000231231 N 0.780
MDP0000199885 Malus x domestica MDP0000199885 N 0.000
MDP0000171737 Malus x domestica MDP0000171737 N 0.802
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.747
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.747
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.725
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.747
Medtr2g005610 Medicago truncatula Medtr2g005610 N 0.747
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.758
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.769
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.714
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.758
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.736
chr6.CM0885.260.nc Lotus japonicus chr6.CM0885.260.nc N 0.780
chr6.CM0885.320.nc Lotus japonicus chr6.CM0885.320.nc N 0.780
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.747
LjSGA_011466.1 Lotus japonicus LjSGA_011466.1 N 0.000
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.747
LjT10H22.120.nd Lotus japonicus LjT10H22.120.nd N 0.000
MDP0000132385 Malus x domestica MDP0000132385 N 0.725
ppa018635m Prunus persica ppa018635m N 0.769
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.703
PK01736.1 Cannabis sativa PK01736.1 N 0.000
BRADI2G12380 Brachypodium distachyon BRADI2G12380 N 0.000
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.758
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.725
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.000
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.725
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.747
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.714
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.000
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.000
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.802
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.000
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.000
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.000
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.791
LOC_Os01g22630 Oryza sativa LOC_Os01g22630 N 0.000
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.758
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.714
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.000
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.714
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.703
PK02315.1 Cannabis sativa PK02315.1 N 0.769
PK05579.1 Cannabis sativa PK05579.1 N 0.000
PK17832.1 Cannabis sativa PK17832.1 N 0.703
PK23104.1 Cannabis sativa PK23104.1 N 0.736
PK26094.1 Cannabis sativa PK26094.1 N 0.813
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.714
ECT9 Arabidopsis thaliana AT1G27960-TAIR-G N 0.000
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.725
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.758
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.714
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.000
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.714
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.758
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.714
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.725
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.747
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.758
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.769
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.747
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.758
29955.m001158 Ricinus communis 29955.m001158 N 0.791
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.000
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.000
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.000
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.000
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.000
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.857
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.857
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.857
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.857
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.780
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.780
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.703
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.703
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.703
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.703
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.703
29929.m004643 Ricinus communis 29929.m004643 N 0.000
29890.m000285 Ricinus communis 29890.m000285 N 0.000
29889.m003364 Ricinus communis 29889.m003364 N 0.769
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.703
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.725
B9N0D5_POPTR Populus trichocarpa POPTR_0004s23250 N 0.780
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.000
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.703
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.769
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.736
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.736
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.758
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.703
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.000
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.725
SB03G031190 Sorghum bicolor Sb03g031190 N 0.747
SB06G027960 Sorghum bicolor Sb06g027960 N 0.703
SB07G006330 Sorghum bicolor Sb07g006330 N 0.747
SB07G024500 Sorghum bicolor Sb07g024500 N 0.725
29765.m000746 Ricinus communis 29765.m000746 N 0.813
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.703