ENSRNOG00000021280 (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000021280 T41145_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.901
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.901
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.901
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.879
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.730
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000034481 RRM 2 71
ENSRNOP00000034481 RRM 93 162

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

243 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAA49741 Xenopus laevis AAA49741 I 0.830
AAA49742 Xenopus laevis AAA49742 I 0.830
AAA49949 Xenopus laevis AAA49949 I 0.780
AAA49950 Xenopus laevis AAA49950 I 0.769
AAH45260 Xenopus laevis AAH45260 I 0.844
AAH72090 Xenopus laevis AAH72090 I 0.844
AAI69881 Xenopus laevis AAI69881 I 0.769
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.901
Ame_R015370 Ailuropoda melanoleuca Ame_R015370 I 0.705
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.836
CBF67555 Xenopus laevis CBF67555 I 0.830
CBF67578 Xenopus laevis CBF67578 I 0.769
CBF67672 Xenopus laevis CBF67672 I 0.844
CBU92428 Xenopus laevis CBU92428 I 0.830
CBU92451 Xenopus laevis CBU92451 I 0.769
CBU92546 Xenopus laevis CBU92546 I 0.844
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.727
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.766
D3ZX95_RAT Rattus norvegicus ENSRNOG00000027006 I 0.711
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.773
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.851
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.872
D4ABW2_RAT Rattus norvegicus ENSRNOG00000032168 I 0.719
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.850
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.887
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.796
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.850
ENSCAFG00000003418 Canis familiaris ENSCAFG00000003418 I 0.721
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.796
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.817
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.782
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.814
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.776
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.731
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.735
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.858
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.810
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.825
ENSCAFG00000008301 Canis familiaris ENSCAFG00000008301 I 0.755
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.731
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.757
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.887
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.845
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.710
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.782
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.814
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.766
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.824
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.762
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.731
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.803
ENSCAFG00000018456 Canis familiaris ENSCAFG00000018456 I 0.701
ENSCAFG00000018580 Canis familiaris ENSCAFG00000018580 I 0.703
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.789
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.818
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.810
ENSCAFG00000023056 Canis familiaris ENSCAFG00000023056 I 0.717
ENSCAFG00000024812 Canis familiaris ENSCAFG00000024812 I 0.711
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.789
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.790
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.836
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.836
ENSCJAG00000001302 Callithrix jacchus ENSCJAG00000001302 I 0.768
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.824
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.829
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.851
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.743
ENSCJAG00000005407 Callithrix jacchus ENSCJAG00000005407 I 0.721
ENSCJAG00000006928 Callithrix jacchus ENSCJAG00000006928 I 0.702
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.836
ENSCJAG00000007634 Callithrix jacchus ENSCJAG00000007634 I 0.719
ENSCJAG00000007639 Callithrix jacchus ENSCJAG00000007639 I 0.750
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.732
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.837
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.879
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.850
ENSCJAG00000017130 Callithrix jacchus ENSCJAG00000017130 I 0.814
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.901
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.836
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.872
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.837
ENSCJAG00000032970 Callithrix jacchus ENSCJAG00000032970 I 0.771
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.807
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.901
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.864
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.782
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.872
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.901
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.851
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.887
ENSEEUG00000009941 Erinaceus europaeus ENSEEUG00000009941 I 0.779
ENSEEUG00000011837 Erinaceus europaeus ENSEEUG00000011837 I 0.779
ENSETEG00000001872 Echinops telfairi ENSETEG00000001872 I 0.723
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.850
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.901
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.901
ENSG00000231942 Homo sapiens ENSG00000231942 I 0.703
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.816
ENSGGOG00000022020 Gorilla gorilla ENSGGOG00000022020 I 0.716
ENSGGOG00000025265 Gorilla gorilla ENSGGOG00000025265 I 0.800
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.887
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.716
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.836
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.821
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.887
ENSLAFG00000029171 Loxodonta africana ENSLAFG00000029171 I 0.748
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.894
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.851
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.859
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.782
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.901
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.824
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.887
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.782
ENSMMUG00000004182 Macaca mulatta ENSMMUG00000004182 I 0.718
ENSMMUG00000004528 Macaca mulatta ENSMMUG00000004528 I 0.703
ENSMMUG00000005993 Macaca mulatta ENSMMUG00000005993 I 0.721
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.857
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.731
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.779
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.807
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.753
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.850
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.781
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.796
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.879
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.887
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.901
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.865
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.887
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.894
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.857
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.879
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.887
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.894
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.901
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.887
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.894
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.724
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.894
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.816
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.793
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.739
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.710
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.739
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.858
ENSPTRG00000018253 Pan troglodytes ENSPTRG00000018253 I 0.709
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.901
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.851
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.850
ENSRNOG00000013650 Rattus norvegicus ENSRNOG00000013650 I 0.711
ENSRNOG00000023438 Rattus norvegicus ENSRNOG00000023438 I 0.800
ENSRNOG00000030901 Rattus norvegicus ENSRNOG00000030901 I 0.723
ENSRNOG00000031316 Rattus norvegicus ENSRNOG00000031316 I 0.701
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.859
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.872
ENSRNOG00000042093 Rattus norvegicus ENSRNOG00000042093 I 0.718
ENSSARG00000008882 Sorex araneus ENSSARG00000008882 I 0.730
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.809
ENSSARG00000010620 Sorex araneus ENSSARG00000010620 I 0.723
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.901
ENSSSCG00000005428 Sus scrofa ENSSSCG00000005428 I 0.807
ENSSSCG00000015989 Sus scrofa ENSSSCG00000015989 I 0.711
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.836
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.901
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.871
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.879
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.773
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.901
Gm8991 Mus musculus ENSMUSG00000059179 I 0.780
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.773
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.809
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.901
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.901
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.901
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.851
HNRNPA1 Homo sapiens ENSG00000135486 D 0.901
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.879
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.901
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.780
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.782
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.745
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.787
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.782
HNRNPA3 Tetraodon nigroviridis ENSTNIG00000016958 I 0.702
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.787
HNRNPA3 Homo sapiens ENSG00000170144 I 0.782
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.782
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.782
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.782
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.730
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.787
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.782
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.782
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.782
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.775
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.782
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.782
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.734
HNRNPA3 Loxodonta africana ENSLAFG00000027712 I 0.711
HNRNPA3 Gasterosteus aculeatus ENSGACG00000004477 I 0.741
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.787
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.782
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.787
LOC100054206 Equus caballus ENSECAG00000006699 I 0.824
LOC100066794 Equus caballus ENSECAG00000023237 I 0.780
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.782
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.901
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.857
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.894
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.879
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.872
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.782
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.879
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.879
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.894
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.894
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.901
LOC781499 Bos taurus ENSBTAG00000021580 I 0.782
LOC785445 Bos taurus ENSBTAG00000025621 I 0.871
P17130 Xenopus laevis P17130 I 0.830
P51968 Xenopus laevis P51968 I 0.780
P51992 Xenopus laevis P51992 I 0.769
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.787
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.901
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.901
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.887
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.901
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.901
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.901
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.782
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.803
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.901
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.796
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.741
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.858
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.858
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.830
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.843
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.814
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.782
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.736
zgc:66127 Danio rerio ENSDARG00000011020 I 0.752