PABPC4 (Tetraodon nigroviridis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTNIG00000016902 T42158_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.910
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.867
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.867
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.867
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.803
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000012013 RRM 13 83
ENSTNIP00000012013 RRM 101 169
ENSTNIP00000012013 RRM 193 262
ENSTNIP00000012013 RRM 296 364
ENSTNIP00000020020 RRM 13 83
ENSTNIP00000020020 RRM 101 169
ENSTNIP00000020020 RRM 193 262
ENSTNIP00000020020 RRM 296 364

Links

Other RRM family RBPs
Other Tetraodon nigroviridis RBPs

165 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
185682 Helobdella robusta 185682 I 0.707
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.910
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.910
AAA60936 Xenopus laevis AAA60936 I 0.857
AAEL010318 Aedes aegypti AAEL010318 I 0.753
AAH52100 Xenopus laevis AAH52100 I 0.860
AAH71118 Xenopus laevis AAH71118 I 0.796
AAH72110 Xenopus laevis AAH72110 I 0.871
AAH73435 Xenopus laevis AAH73435 I 0.932
AAH80020 Xenopus laevis AAH80020 I 0.785
AAI08463 Xenopus laevis AAI08463 I 0.871
AAK29408 Xenopus laevis AAK29408 I 0.785
AGAP011092 Anopheles gambiae AGAP011092 I 0.746
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.746
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.746
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.746
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.839
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.763
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.842
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.729
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.753
CAA40721 Xenopus laevis CAA40721 I 0.860
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.756
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.756
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.875
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.900
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.721
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.892
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.871
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.867
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.728
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.717
ENSG00000250177 Homo sapiens ENSG00000250177 I 0.735
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.824
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.867
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.910
ENSMICG00000009121 Microcebus murinus ENSMICG00000009121 I 0.724
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.867
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.871
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.946
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.867
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.867
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.867
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.835
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.910
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.828
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.753
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.867
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.867
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.867
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.846
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.842
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.849
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.867
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.717
estExt_Genewise1.C_sca_1150143 Lottia gigantea estExt_Genewise1.C_sca_1150143 I 0.721
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.756
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.735
e_gw1.7.538.1 Trichoplax adhaerens e_gw1.7.538.1 I 0.701
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.722
GA18673-RA Drosophila pseudoobscura FBgn0078673 I 0.704
GH21052 Drosophila grimshawi FBgn0128514 I 0.725
GI18654 Drosophila mojavensis FBgn0141393 I 0.715
GJ21671 Drosophila virilis FBgn0208790 I 0.708
GK19652 Drosophila willistoni FBgn0221650 I 0.701
GL11548 Drosophila persimilis FBgn0149157 I 0.704
Gm10110 Mus musculus ENSMUSG00000062093 I 0.903
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.756
ISCW014211 Ixodes scapularis ISCW014211 I 0.743
LOC100054235 Equus caballus ENSECAG00000009396 I 0.910
LOC100056021 Equus caballus ENSECAG00000020699 I 0.753
LOC100070836 Equus caballus ENSECAG00000022681 I 0.760
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.839
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.867
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.742
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.742
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.742
P20965 Xenopus laevis P20965 I 0.860
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.864
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.871
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.871
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.867
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.871
PABPC1 Homo sapiens ENSG00000070756 D 0.867
pabpc1a Danio rerio ENSDARG00000017219 I 0.842
pabpc1b Danio rerio ENSDARG00000021140 I 0.829
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.760
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.785
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.789
PABPC1L Homo sapiens ENSG00000101104 I 0.753
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.771
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.789
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.738
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.742
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.749
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.714
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.738
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.756
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.742
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.821
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.760
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.792
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.760
PABPC1L Bos taurus ENSBTAG00000016849 I 0.771
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.799
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.756
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.767
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.767
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.760
PABPC1L Gallus gallus ENSGALG00000004123 I 0.817
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.789
pabpc1l Danio rerio ENSDARG00000002597 I 0.778
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.767
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.753
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.717
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.756
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.706
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.817
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.817
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.857
PABPC3 Homo sapiens ENSG00000151846 D 0.803
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.849
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.860
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.821
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.821
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.806
pabpc4 Danio rerio ENSDARG00000059259 I 0.982
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.910
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.806
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.957
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.910
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.910
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.914
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.910
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.907
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.900
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.910
PABPC4 Gallus gallus ENSGALG00000003800 I 0.946
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.971
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.910
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.867
PABPC4 Spermophilus tridecemlineatus ENSSTOG00000010416 I 0.774
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.910
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.946
PABPC4 Otolemur garnettii ENSOGAG00000004067 I 0.771
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.907
PABPC4 Homo sapiens ENSG00000090621 D 0.910
PABPC4L Callithrix jacchus ENSCJAG00000003241 I 0.721
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.806
PHUM617090 Pediculus humanus PHUM617090 I 0.749
Q2VIP1_9PRIM Gorilla gorilla ENSGGOG00000006785 I 0.701
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.814
Q6GR16 Xenopus laevis Q6GR16 I 0.796
Q6IP09 Xenopus laevis Q6IP09 I 0.871
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.989
Q98SP8 Xenopus laevis Q98SP8 I 0.785
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.929
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.835
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.771
XM_001379460.1 Monodelphis domestica ENSMODG00000015024 I 0.724
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.722
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.722
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.864
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.864