B9N817_POPTR (Populus trichocarpa)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 POPTR_0018s14670 T62253_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0018s14670.1 YTH 419 509

Links

Other YTH family RBPs
Other Populus trichocarpa RBPs

149 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29889.m003364 Ricinus communis 29889.m003364 N 0.725
29890.m000285 Ricinus communis 29890.m000285 N 0.945
29929.m004643 Ricinus communis 29929.m004643 N 0.813
29950.m001140 Ricinus communis 29950.m001140 N 0.703
29955.m001158 Ricinus communis 29955.m001158 N 0.736
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.703
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.813
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.703
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.945
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.835
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.747
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.725
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.703
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.725
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.835
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.747
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.725
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.703
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.703
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.758
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.824
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.703
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.703
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.747
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.747
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.802
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.725
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.813
cassava16277.m1 Manihot esculenta cassava16277.m1 N 0.714
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.725
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.725
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.824
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.824
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.824
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.703
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.703
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.703
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.703
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.703
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.703
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.703
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.703
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.703
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.703
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.703
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.703
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.703
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.703
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.703
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.758
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.758
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.813
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.791
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.725
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.747
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.890
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.714
ECT10 Arabidopsis thaliana AT5G58190-TAIR-G N 0.846
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.725
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.868
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.725
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.714
ECT9 Arabidopsis thaliana AT1G27960-TAIR-G N 0.747
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.791
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.714
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.747
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.780
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.714
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.736
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.758
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.736
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.813
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.736
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.725
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.725
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.736
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.703
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.758
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.791
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.747
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.703
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.835
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.857
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.714
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.747
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.747
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.736
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.736
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.747
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.725
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.758
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.736
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.703
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.758
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.824
MDP0000124048 Malus x domestica MDP0000124048 N 0.703
MDP0000129009 Malus x domestica MDP0000129009 N 0.703
MDP0000132385 Malus x domestica MDP0000132385 N 0.725
MDP0000171737 Malus x domestica MDP0000171737 N 0.758
MDP0000189157 Malus x domestica MDP0000189157 N 0.846
MDP0000231231 Malus x domestica MDP0000231231 N 0.725
MDP0000248088 Malus x domestica MDP0000248088 N 0.802
MDP0000286471 Malus x domestica MDP0000286471 N 0.725
MDP0000287088 Malus x domestica MDP0000287088 N 0.813
MDP0000299155 Malus x domestica MDP0000299155 N 0.747
MDP0000306387 Malus x domestica MDP0000306387 N 0.725
MDP0000405927 Malus x domestica MDP0000405927 N 0.813
MDP0000552419 Malus x domestica MDP0000552419 N 0.802
MDP0000617859 Malus x domestica MDP0000617859 N 0.813
MDP0000718677 Malus x domestica MDP0000718677 N 0.703
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.714
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.747
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.802
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.758
mgf009938m Mimulus guttatus mgf009938m N 0.703
mgf013853m Mimulus guttatus mgf013853m N 0.703
mgf013935m Mimulus guttatus mgf013935m N 0.703
mgf014143m Mimulus guttatus mgf014143m N 0.703
mgf015583m Mimulus guttatus mgf015583m N 0.703
mgf017987m Mimulus guttatus mgf017987m N 0.714
mgf019821m Mimulus guttatus mgf019821m N 0.901
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.747
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.714
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.714
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.714
PK01736.1 Cannabis sativa PK01736.1 N 0.769
PK05579.1 Cannabis sativa PK05579.1 N 0.890
PK17832.1 Cannabis sativa PK17832.1 N 0.824
PK23104.1 Cannabis sativa PK23104.1 N 0.725
PK26094.1 Cannabis sativa PK26094.1 N 0.703
ppa002483m Prunus persica ppa002483m N 0.813
ppa002588m Prunus persica ppa002588m N 0.813
ppa002677m Prunus persica ppa002677m N 0.890
ppa003664m Prunus persica ppa003664m N 0.747
ppa018635m Prunus persica ppa018635m N 0.736
SB01G008170 Sorghum bicolor Sb01g008170 N 0.736
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.703
SB02G003990 Sorghum bicolor Sb02g003990 N 0.703
SB03G031190 Sorghum bicolor Sb03g031190 N 0.736
SB06G027960 Sorghum bicolor Sb06g027960 N 0.758
SB07G006330 Sorghum bicolor Sb07g006330 N 0.758
SB07G024500 Sorghum bicolor Sb07g024500 N 0.813
XM_002864508.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001450 N 0.846
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.714
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.703
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.868
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.714
XM_002893450.1 Arabidopsis lyrata fgenesh2_kg.1__2951__AT1G27960.1 N 0.758
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.725