AAA49950 (Xenopus laevis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AAA49950 T59422_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.859
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.859
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.859
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.838
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.796
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
AAA49950 RRM 29 98
AAA49950 RRM 120 191

Links

Other RRM family RBPs
Other Xenopus laevis RBPs

283 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R005385 Ailuropoda melanoleuca Ame_R005385 I 0.000
NCL Bos taurus ENSBTAG00000016174 I 0.000
ENSBTAG00000026909 Bos taurus ENSBTAG00000026909 I 0.000
LOC100395223 Callithrix jacchus ENSCJAG00000013538 I 0.000
NCL Canis familiaris ENSCAFG00000011037 I 0.000
NCL Cavia porcellus ENSCPOG00000001034 I 0.000
NCL Choloepus hoffmanni ENSCHOG00000012860 I 0.000
Ncl Dipodomys ordii ENSDORG00000012513 I 0.000
ENSETEG00000018937 Echinops telfairi ENSETEG00000018937 I 0.000
ENSETEG00000014756 Echinops telfairi ENSETEG00000014756 I 0.000
Q6X9Z0_HORSE Equus caballus ENSECAG00000021868 I 0.000
NCL Erinaceus europaeus ENSEEUG00000005913 I 0.000
NCL Gorilla gorilla ENSGGOG00000004300 I 0.000
ENSGGOG00000022986 Gorilla gorilla ENSGGOG00000022986 I 0.000
NCL Homo sapiens ENSG00000115053 D 0.000
NCL Loxodonta africana ENSLAFG00000013061 I 0.000
NCL Macaca mulatta ENSMMUG00000018094 I 0.000
NCL Macropus eugenii ENSMEUG00000012335 I 0.000
NCL Monodelphis domestica ENSMODG00000002470 I 0.000
Ncl Mus musculus ENSMUSG00000026234 I 0.000
NCL Ornithorhynchus anatinus ENSOANG00000008732 I 0.000
NCL Oryctolagus cuniculus ENSOCUG00000004312 I 0.000
NCL Pan troglodytes ENSPTRG00000013025 I 0.000
ENSPPYG00000013265 Pongo pygmaeus ENSPPYG00000013265 I 0.000
NCL Pteropus vampyrus ENSPVAG00000000297 I 0.000
ENSRNOG00000008664 Rattus norvegicus ENSRNOG00000008664 I 0.000
Ncl Rattus norvegicus ENSRNOG00000018273 I 0.000
NCL Sorex araneus ENSSARG00000010007 I 0.000
ENSSSCG00000016275 Sus scrofa ENSSSCG00000016275 I 0.000
NCL Tarsius syrichta ENSTSYG00000004355 I 0.000
ENSTBEG00000001546 Tupaia belangeri ENSTBEG00000001546 I 0.000
ENSTBEG00000002469 Tupaia belangeri ENSTBEG00000002469 I 0.000
NCL Tursiops truncatus ENSTTRG00000009094 I 0.000
NCL Vicugna pacos ENSVPAG00000001796 I 0.000