AAA49950 (Xenopus laevis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AAA49950 T59422_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.859
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.859
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.859
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.838
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.796
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
AAA49950 RRM 29 98
AAA49950 RRM 120 191

Links

Other RRM family RBPs
Other Xenopus laevis RBPs

283 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.859
Ame_R015370 Ailuropoda melanoleuca Ame_R015370 I 0.844
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.866
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.937
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.859
LOC781499 Bos taurus ENSBTAG00000021580 I 0.923
LOC785445 Bos taurus ENSBTAG00000025621 I 0.825
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.797
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.838
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.881
ENSCJAG00000006928 Callithrix jacchus ENSCJAG00000006928 I 0.845
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.804
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.790
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.859
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.859
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.923
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.838
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.817
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.859
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.783
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.852
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.785
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.838
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.790
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.831
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.803
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.783
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.859
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.817
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.750
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.817
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.764
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.817
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.845
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.785
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.923
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.778
ENSCAFG00000023240 Canis familiaris ENSCAFG00000023240 I 0.725
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.772
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.831
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.757
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.838
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.930
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.923
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.796
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.852
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.923
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.859
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.789
ENSDORG00000011155 Dipodomys ordii ENSDORG00000011155 I 0.839
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.783
LOC100066794 Equus caballus ENSECAG00000023237 I 0.930
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.859
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.845
ENSEEUG00000000925 Erinaceus europaeus ENSEEUG00000000925 I 0.707
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.817
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.859
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.944
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.937
HNRNPA3 Gasterosteus aculeatus ENSGACG00000004477 I 0.803
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.845
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.859
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.923
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.852
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.831
ENSGGOG00000022020 Gorilla gorilla ENSGGOG00000022020 I 0.845
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.859
HNRNPA3 Homo sapiens ENSG00000170144 I 0.923
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.838
HNRNPA1 Homo sapiens ENSG00000135486 D 0.859
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.824
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.866
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.845
HNRNPA3 Loxodonta africana ENSLAFG00000027712 I 0.846
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.866
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.859
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.838
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.783
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.838
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.852
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.804
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.923
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.923
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.859
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.937
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.743
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.923
ENSMODG00000024570 Monodelphis domestica ENSMODG00000024570 I 0.713
Gm8991 Mus musculus ENSMUSG00000059179 I 0.923
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.923
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.859
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.838
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.923
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.845
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.859
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.778
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.852
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.845
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.859
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.852
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.845
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.831
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.797
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.852
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.852
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.838
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.859
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.916
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.852
ENSOCUG00000006431 Oryctolagus cuniculus ENSOCUG00000006431 I 0.730
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.824
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.831
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.838
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.859
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.859
ENSPTRG00000018253 Pan troglodytes ENSPTRG00000018253 I 0.831
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.923
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.859
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.859
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.895
ENSPPYG00000001326 Pongo pygmaeus ENSPPYG00000001326 I 0.747
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.874
ENSPPYG00000016683 Pongo pygmaeus ENSPPYG00000016683 I 0.817
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.817
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.859
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.923
ENSRNOG00000030250 Rattus norvegicus ENSRNOG00000030250 I 0.753
ENSRNOG00000030901 Rattus norvegicus ENSRNOG00000030901 I 0.831
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.901
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.806
ENSRNOG00000033211 Rattus norvegicus ENSRNOG00000033211 I 0.727
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.859
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.915
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.824
ENSRNOG00000042093 Rattus norvegicus ENSRNOG00000042093 I 0.000
ENSRNOG00000042377 Rattus norvegicus ENSRNOG00000042377 I 0.755
ENSRNOG00000043173 Rattus norvegicus ENSRNOG00000043173 I 0.727
D3ZB98_RAT Rattus norvegicus ENSRNOG00000029641 I 0.760
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.824
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.888
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.923
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.810
D4A8U2_RAT Rattus norvegicus ENSRNOG00000007252 I 0.733
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.783
ENSRNOG00000013650 Rattus norvegicus ENSRNOG00000013650 I 0.873
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.810
ENSRNOG00000022655 Rattus norvegicus ENSRNOG00000022655 N 0.000
ENSRNOG00000024652 Rattus norvegicus ENSRNOG00000024652 I 0.707
D3ZK54_RAT Rattus norvegicus ENSRNOG00000025482 I 0.713
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.783
D3ZX95_RAT Rattus norvegicus ENSRNOG00000027006 I 0.846
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.923
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.866
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.789
ENSSSCG00000015989 Sus scrofa ENSSSCG00000015989 I 0.846
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.923
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.859
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.937
Q1KKS6_FUGRU Takifugu rubripes ENSTRUG00000017504 I 0.817
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.817
HNRNPA3 Tetraodon nigroviridis ENSTNIG00000016958 I 0.789
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.817
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.859
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.790
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.811
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.923
ENSTTRG00000015563 Tursiops truncatus ENSTTRG00000015563 I 0.740
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.859
CBF67578 Xenopus laevis CBF67578 I 1.000
CBF67672 Xenopus laevis CBF67672 I 0.831
CBU92428 Xenopus laevis CBU92428 I 0.817
CBU92451 Xenopus laevis CBU92451 I 1.000
CBU92546 Xenopus laevis CBU92546 I 0.831
P17130 Xenopus laevis P17130 I 0.817
P51968 Xenopus laevis P51968 I 0.965
CBF67555 Xenopus laevis CBF67555 I 0.817
AAI69881 Xenopus laevis AAI69881 I 1.000
AAH72090 Xenopus laevis AAH72090 I 0.831
AAH45260 Xenopus laevis AAH45260 I 0.838
AAA49949 Xenopus laevis AAA49949 I 0.965
AAA49742 Xenopus laevis AAA49742 I 0.817
AAA49741 Xenopus laevis AAA49741 I 0.817
P51992 Xenopus laevis P51992 I 1.000
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.845
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.958