CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PDK_20s1631851g001
(
Phoenix dactylifera
)
YTH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF04146 (YTH)
IPR007275
PDK_20s1631851g001
T62557_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PDK_20s1631851g001
YTH
434
524
LFFSVNASGQFCGIAEMVGRVDFSKNMDFWQQDKWTGFFPVKWHMIKDIPNPQLRHIILENNDNKPVTNSRDTQEVKFPQGTEVLSIFKSY
Links
Other
YTH
family RBPs
Other
Phoenix dactylifera
RBPs
165 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
XM_002889837.1
Arabidopsis lyrata
fgenesh2_kg.1__1255__AT1G11650.2
N
0.000
ATRBP45B
Arabidopsis thaliana
AT1G11650-TAIR-G
N
0.000
PK10695.1
Cannabis sativa
PK10695.1
I
0.000
Cucsa.085910
Cucumis sativus
Cucsa.085910
I
0.000
Cucsa.085920
Cucumis sativus
Cucsa.085920
I
0.000
Glyma07g38940.1
Glycine max
Glyma07g38940.1
I
0.000
Glyma13g27570.1
Glycine max
Glyma13g27570.1
I
0.000
Glyma15g11380.1
Glycine max
Glyma15g11380.1
I
0.000
Glyma17g01800.1
Glycine max
Glyma17g01800.1
I
0.000
chr4.CM1334.150.nc
Lotus japonicus
chr4.CM1334.150.nc
N
0.000
chr6.CM0139.780.nd
Lotus japonicus
chr6.CM0139.780.nd
I
0.000
MDP0000294628
Malus x domestica
MDP0000294628
I
0.000
cassava44219.valid.m1
Manihot esculenta
cassava44219.valid.m1
N
0.000
cassava37003.valid.m1
Manihot esculenta
cassava37003.valid.m1
I
0.000
cassava37002.valid.m1
Manihot esculenta
cassava37002.valid.m1
I
0.000
cassava37001.valid.m1
Manihot esculenta
cassava37001.valid.m1
I
0.000
cassava37000.valid.m1
Manihot esculenta
cassava37000.valid.m1
I
0.000
cassava36999.valid.m1
Manihot esculenta
cassava36999.valid.m1
I
0.000
cassava35906.valid.m1
Manihot esculenta
cassava35906.valid.m1
I
0.000
Medtr8g146650
Medicago truncatula
Medtr8g146650
N
0.000
mgf014417m
Mimulus guttatus
mgf014417m
N
0.000
mgf010468m
Mimulus guttatus
mgf010468m
I
0.000
B9H1C9_POPTR
Populus trichocarpa
POPTR_0004s01690
N
0.000
A9PGI8_POPTR
Populus trichocarpa
POPTR_0001s45000
I
0.000
ppa006617m
Prunus persica
ppa006617m
N
0.000
29842.m003612
Ricinus communis
29842.m003612
N
0.000
29666.m001436
Ricinus communis
29666.m001436
I
0.000