XM_543834.2 (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000002157 T34988_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.887
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.887
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.887
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.879
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.723
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000019872 RRM 16 85
ENSCAFP00000019872 RRM 107 176

Links

Other RRM family RBPs
Other Canis familiaris RBPs

241 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
HNRNPA1 Homo sapiens ENSG00000135486 D 0.866
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.859
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.713
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.852
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.741
Gm8991 Mus musculus ENSMUSG00000059179 I 0.746
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.748
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.866
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.838
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.843
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.748
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.819
ENSMODG00000002376 Monodelphis domestica ENSMODG00000002376 I 0.708
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.810
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.829
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.866
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.845
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.852
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.779
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.761
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.859
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.736
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.845
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.859
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.866
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.859
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.852
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.859
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.824
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.859
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.845
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.866
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.852
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.850
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.866
ENSMICG00000012083 Microcebus murinus ENSMICG00000012083 I 0.703
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.829
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.746
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.832
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.748
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.824
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.859
ENSLAFG00000029171 Loxodonta africana ENSLAFG00000029171 I 0.787
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.838
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.748
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.748
ENSMMUG00000004182 Macaca mulatta ENSMMUG00000004182 I 0.732
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.786
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.775
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.731
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.829
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.866
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.741
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.743
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.859
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.859
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.796
ENSMMUG00000005750 Macaca mulatta ENSMMUG00000005750 I 0.729
ENSMMUG00000004528 Macaca mulatta ENSMMUG00000004528 I 0.757
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.768
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.729
P51992 Xenopus laevis P51992 I 0.736
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.789
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.866
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.803
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.754
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.748
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.866
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.732
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.718
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.746
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.845
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.810
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.866
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.803
AAA49741 Xenopus laevis AAA49741 I 0.782
AAA49742 Xenopus laevis AAA49742 I 0.782
P51968 Xenopus laevis P51968 I 0.746
P17130 Xenopus laevis P17130 I 0.782
CBU92546 Xenopus laevis CBU92546 I 0.796
CBU92451 Xenopus laevis CBU92451 I 0.736
CBU92428 Xenopus laevis CBU92428 I 0.782
CBF67672 Xenopus laevis CBF67672 I 0.796
CBF67578 Xenopus laevis CBF67578 I 0.736
CBF67555 Xenopus laevis CBF67555 I 0.782
AAI69881 Xenopus laevis AAI69881 I 0.736
AAH72090 Xenopus laevis AAH72090 I 0.796
AAH45260 Xenopus laevis AAH45260 I 0.796
AAA49950 Xenopus laevis AAA49950 I 0.736
AAA49949 Xenopus laevis AAA49949 I 0.746
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.748
ENSSSCG00000005428 Sus scrofa ENSSSCG00000005428 I 0.746
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.810
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.796
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.782
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.817
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.748
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.748
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.866
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.866
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.866
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.866
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.748
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.866
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.845
ENSRNOG00000023438 Rattus norvegicus ENSRNOG00000023438 I 0.746
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.817
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.866
ENSSARG00000010620 Sorex araneus ENSSARG00000010620 I 0.704
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.782
ENSSARG00000008882 Sorex araneus ENSSARG00000008882 I 0.711
ENSRNOG00000042093 Rattus norvegicus ENSRNOG00000042093 I 0.750
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.831
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.739
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.866
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.824
D4ABW2_RAT Rattus norvegicus ENSRNOG00000032168 I 0.724
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.725
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.831
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.748
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.706
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.803
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.810
ENSCAFG00000016707 Canis familiaris ENSCAFG00000016707 I 0.736
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.768
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.843
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.771
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.768
ENSCAFG00000013932 Canis familiaris ENSCAFG00000013932 I 0.729
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.748
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.743
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.871
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.852
ENSCAFG00000009606 Canis familiaris ENSCAFG00000009606 I 0.745
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.762
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.760
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.750
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.850
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.837
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.814
ENSCAFG00000024812 Canis familiaris ENSCAFG00000024812 I 0.750
ENSCAFG00000024636 Canis familiaris ENSCAFG00000024636 I 0.708
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.859
ENSCAFG00000023056 Canis familiaris ENSCAFG00000023056 I 0.715
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.829
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.837
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.836
ENSCAFG00000019097 Canis familiaris ENSCAFG00000019097 I 0.714
ENSCAFG00000018580 Canis familiaris ENSCAFG00000018580 I 0.729
ENSCAFG00000018456 Canis familiaris ENSCAFG00000018456 I 0.712
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.764
ENSCAFG00000008301 Canis familiaris ENSCAFG00000008301 I 0.794
ENSCAFG00000007918 Canis familiaris ENSCAFG00000007918 I 0.724
ENSCAFG00000003921 Canis familiaris ENSCAFG00000003921 I 0.715
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.836
ENSCAFG00000003418 Canis familiaris ENSCAFG00000003418 I 0.712
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.796
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.821
ENSCAFG00000000746 Canis familiaris ENSCAFG00000000746 I 0.714
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.747
LOC785445 Bos taurus ENSBTAG00000025621 I 0.817
LOC781499 Bos taurus ENSBTAG00000021580 I 0.748
ENSBTAG00000009937 Bos taurus ENSBTAG00000009937 I 0.703
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.866
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.754
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.850
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.824
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.817
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.851
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.792
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.824
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.740
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.796
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.866
ENSCAFG00000006386 Canis familiaris ENSCAFG00000006386 I 0.714
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.803
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.729
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.837
ENSCAFG00000005307 Canis familiaris ENSCAFG00000005307 I 0.701
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.782
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.852
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.803
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.852
ENSEEUG00000011837 Erinaceus europaeus ENSEEUG00000011837 I 0.732
ENSEEUG00000009941 Erinaceus europaeus ENSEEUG00000009941 I 0.754
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.852
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.845
LOC100066794 Equus caballus ENSECAG00000023237 I 0.746
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.866
LOC100054206 Equus caballus ENSECAG00000006699 I 0.871
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.782
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.748
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.866
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.725
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.838
ENSETEG00000001872 Echinops telfairi ENSETEG00000001872 I 0.730
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.796
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.866
ENSGGOG00000025265 Gorilla gorilla ENSGGOG00000025265 I 0.746
ENSGGOG00000024290 Gorilla gorilla ENSGGOG00000024290 I 0.708
ENSGGOG00000022797 Gorilla gorilla ENSGGOG00000022797 I 0.703
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.748
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.866
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.746
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.775
HNRNPA3 Gasterosteus aculeatus ENSGACG00000004477 I 0.701
ENSG00000231942 Homo sapiens ENSG00000231942 I 0.715
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.866
HNRNPA3 Homo sapiens ENSG00000170144 I 0.748
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.746
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.748
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.748
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.810
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.852
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.706
ENSCJAG00000007639 Callithrix jacchus ENSCJAG00000007639 I 0.775
ENSCJAG00000007634 Callithrix jacchus ENSCJAG00000007634 I 0.738
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.789
ENSCJAG00000005407 Callithrix jacchus ENSCJAG00000005407 I 0.733
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.734
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.824
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.859
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.845
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.775
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.850
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.824
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.824
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.803
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.866
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.796
ENSCJAG00000032970 Callithrix jacchus ENSCJAG00000032970 I 0.732
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.817
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.838
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.838
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.748
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.789
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.866
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.866
ENSCJAG00000017130 Callithrix jacchus ENSCJAG00000017130 I 0.768
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.810
ENSCJAG00000001302 Callithrix jacchus ENSCJAG00000001302 I 0.793