mgf017987m (Mimulus guttatus)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 mgf017987m T62429_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
mgf017987m YTH 291 381

Links

Other YTH family RBPs
Other Mimulus guttatus RBPs

159 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.758
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.747
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.758
mgf001716m Mimulus guttatus mgf001716m N 0.725
mgf009938m Mimulus guttatus mgf009938m N 0.725
mgf013853m Mimulus guttatus mgf013853m N 0.725
mgf014143m Mimulus guttatus mgf014143m N 0.989
mgf015583m Mimulus guttatus mgf015583m N 0.989
mgf019846m Mimulus guttatus mgf019846m N 0.703
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.747
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.736
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.000
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.780
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.780
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.890
Glyma16g00490.1 Glycine max Glyma16g00490.1 N 0.000
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.747
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.703
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.703
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.879
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.879
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.857
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.703
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.000
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.758
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.868
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.000
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.747
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.758
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.835
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.846
GRMZM2G303312 Zea mays GRMZM2G303312 N 0.000
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.736
MDP0000256033 Malus x domestica MDP0000256033 N 0.747
MDP0000286471 Malus x domestica MDP0000286471 N 0.769
MDP0000287088 Malus x domestica MDP0000287088 N 0.769
MDP0000306387 Malus x domestica MDP0000306387 N 0.835
MDP0000405927 Malus x domestica MDP0000405927 N 0.769
MDP0000488248 Malus x domestica MDP0000488248 N 0.725
MDP0000552419 Malus x domestica MDP0000552419 N 0.758
MDP0000617859 Malus x domestica MDP0000617859 N 0.769
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.846
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.736
ppa002483m Prunus persica ppa002483m N 0.769
ppa002588m Prunus persica ppa002588m N 0.769
ppa003557m Prunus persica ppa003557m N 0.725
ppa003664m Prunus persica ppa003664m N 0.780
MDP0000248088 Malus x domestica MDP0000248088 N 0.758
MDP0000231231 Malus x domestica MDP0000231231 N 0.769
MDP0000171737 Malus x domestica MDP0000171737 N 0.769
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.769
Medtr2g005610 Medicago truncatula Medtr2g005610 N 0.703
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.868
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.758
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.758
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.868
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.747
chr6.CM0885.260.nc Lotus japonicus chr6.CM0885.260.nc N 0.703
chr6.CM0885.320.nc Lotus japonicus chr6.CM0885.320.nc N 0.703
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.890
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.747
LjSGA_044186.1 Lotus japonicus LjSGA_044186.1 N 0.000
LjSGA_073042.1 Lotus japonicus LjSGA_073042.1 N 0.000
MDP0000132385 Malus x domestica MDP0000132385 N 0.835
ppa018635m Prunus persica ppa018635m N 0.868
PK02315.1 Cannabis sativa PK02315.1 N 0.835
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.000
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.780
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.000
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.824
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.736
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.769
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.879
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.000
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.000
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.747
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.791
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.813
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.000
LOC_Os04g04000 Oryza sativa LOC_Os04g04000 N 0.000
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.791
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.824
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.747
PK17832.1 Cannabis sativa PK17832.1 N 0.758
PK23104.1 Cannabis sativa PK23104.1 N 0.780
PK26094.1 Cannabis sativa PK26094.1 N 0.725
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.824
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.824
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.736
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.769
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.824
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.791
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.813
BGIOSIBCE013986 Oryza indica BGIOSIBCE013986 N 0.000
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.736
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.714
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.769
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.780
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.714
SB09G000580 Sorghum bicolor Sb09g000580 N 0.000
29765.m000746 Ricinus communis 29765.m000746 N 0.725
29889.m003364 Ricinus communis 29889.m003364 N 0.857
29955.m001158 Ricinus communis 29955.m001158 N 0.769
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.736
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.736
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.736
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.736
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.780
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.780
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.703
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.703
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.703
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.758
SB07G024500 Sorghum bicolor Sb07g024500 N 0.758
SB07G006330 Sorghum bicolor Sb07g006330 N 0.791
SB06G027960 Sorghum bicolor Sb06g027960 N 0.736
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.769
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.747
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.769
B9N0D5_POPTR Populus trichocarpa POPTR_0004s23250 N 0.714
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.769
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.747
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.868
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.868
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.758
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.758
B9N770_POPTR Populus trichocarpa POPTR_0022s00680 N 0.000
SB01G008170 Sorghum bicolor Sb01g008170 N 0.000
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.736
SB03G031190 Sorghum bicolor Sb03g031190 N 0.780
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.758