XM_543834.2 (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000002157 T34988_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.887
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.887
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.887
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.879
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.723
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000019872 RRM 16 85
ENSCAFP00000019872 RRM 107 176

Links

Other RRM family RBPs
Other Canis familiaris RBPs

241 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CHGG_04655 Chaetomium globosum CHGG_04655 N 0.000
estExt_fgenesh1_pg.C_30620 Cryphonectria parasitica estExt_fgenesh1_pg.C_30620 N 0.000
e_gw1.2.858.1 Trichoderma reesei e_gw1.2.858.1 N 0.000
e_gw1.3.1867.1 Neurospora discreta e_gw1.3.1867.1 N 0.000
fgenesh1_pg.C_scaffold_2000270 Trichoderma atroviride fgenesh1_pg.C_scaffold_2000270 N 0.000
fgenesh1_pm.1_#_413 Myceliophthora thermophila fgenesh1_pm.1_#_413 N 0.000
fgenesh1_pm.C_scaffold_4000255 Neurospora tetrasperma fgenesh1_pm.C_scaffold_4000255 N 0.000
fgenesh1_pm.sca_18_chr2_1_0000466 Nectria haematococca fgenesh1_pm.sca_18_chr2_1_0000466 N 0.000
fgenesh2_pg.1_#_466 Thielavia terrestris fgenesh2_pg.1_#_466 N 0.000
FOXG_08275 Fusarium oxysporum FOXG_08275 N 0.000
gw1.1.1031.1 Trichoderma virens gw1.1.1031.1 N 0.000
NCU09742 Neurospora crassa NCU09742 N 0.000
Pa_6_3170 Podospora anserina Pa_6_3170 N 0.000
VDBG_08298 Verticillium albo atrum VDBG_08298 N 0.000