pabpc4 (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000059259 T36186_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.921
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.878
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.878
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.878
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.814
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000076763 RRM 14 84
ENSDARP00000076763 RRM 102 170
ENSDARP00000076763 RRM 194 263
ENSDARP00000076763 RRM 297 365

Links

Other RRM family RBPs
Other Danio rerio RBPs

165 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
185682 Helobdella robusta 185682 I 0.710
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.921
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.921
AAA60936 Xenopus laevis AAA60936 I 0.860
AAEL010318 Aedes aegypti AAEL010318 I 0.760
AAH52100 Xenopus laevis AAH52100 I 0.864
AAH71118 Xenopus laevis AAH71118 I 0.810
AAH72110 Xenopus laevis AAH72110 I 0.875
AAH73435 Xenopus laevis AAH73435 I 0.935
AAH80020 Xenopus laevis AAH80020 I 0.799
AAI08463 Xenopus laevis AAI08463 I 0.875
AAK29408 Xenopus laevis AAK29408 I 0.799
AGAP011092 Anopheles gambiae AGAP011092 I 0.749
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.756
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.756
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.756
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.849
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.774
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.853
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.729
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.760
CAA40721 Xenopus laevis CAA40721 I 0.864
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.763
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.763
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.885
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.910
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.731
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.903
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.882
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.878
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.735
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.724
ENSG00000250177 Homo sapiens ENSG00000250177 I 0.739
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.828
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.878
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.921
ENSMICG00000009121 Microcebus murinus ENSMICG00000009121 I 0.731
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.875
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.882
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.950
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.878
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.878
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.878
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.846
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.921
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.839
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.767
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.878
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.878
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.878
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.857
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.853
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.860
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.878
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.728
estExt_Genewise1.C_sca_1150143 Lottia gigantea estExt_Genewise1.C_sca_1150143 I 0.721
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.767
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.735
e_gw1.7.538.1 Trichoplax adhaerens e_gw1.7.538.1 I 0.708
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.725
GA18673-RA Drosophila pseudoobscura FBgn0078673 I 0.708
GE11925 Drosophila yakuba FBgn0229707 I 0.701
GH21052 Drosophila grimshawi FBgn0128514 I 0.729
GI18654 Drosophila mojavensis FBgn0141393 I 0.718
GJ21671 Drosophila virilis FBgn0208790 I 0.711
GK19652 Drosophila willistoni FBgn0221650 I 0.704
GL11548 Drosophila persimilis FBgn0149157 I 0.708
Gm10110 Mus musculus ENSMUSG00000062093 I 0.918
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.767
ISCW014211 Ixodes scapularis ISCW014211 I 0.754
LOC100054235 Equus caballus ENSECAG00000009396 I 0.921
LOC100056021 Equus caballus ENSECAG00000020699 I 0.763
LOC100070836 Equus caballus ENSECAG00000022681 I 0.767
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.846
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.878
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.746
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.746
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.746
P20965 Xenopus laevis P20965 I 0.864
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.882
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.882
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.882
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.867
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.878
PABPC1 Homo sapiens ENSG00000070756 D 0.878
pabpc1a Danio rerio ENSDARG00000017219 I 0.853
pabpc1b Danio rerio ENSDARG00000021140 I 0.843
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.778
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.724
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.803
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.721
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.753
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.789
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.799
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.767
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.771
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.778
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.760
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.756
PABPC1L Homo sapiens ENSG00000101104 I 0.767
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.720
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.796
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.767
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.796
PABPC1L Gallus gallus ENSGALG00000004123 I 0.824
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.771
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.771
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.828
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.778
pabpc1l Danio rerio ENSDARG00000002597 I 0.789
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.753
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.803
PABPC1L Bos taurus ENSBTAG00000016849 I 0.785
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.771
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.770
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.771
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.771
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.749
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.824
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.828
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.825
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.832
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.853
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.860
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.817
PABPC3 Homo sapiens ENSG00000151846 D 0.814
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.864
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.914
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.921
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.921
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.921
PABPC4 Gallus gallus ENSGALG00000003800 I 0.957
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.975
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.925
PABPC4 Homo sapiens ENSG00000090621 D 0.921
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.921
PABPC4 Spermophilus tridecemlineatus ENSSTOG00000010416 I 0.785
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.957
PABPC4 Otolemur garnettii ENSOGAG00000004067 I 0.781
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.921
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.957
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.918
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.982
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.921
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.914
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.817
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.921
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.871
PABPC4L Callithrix jacchus ENSCJAG00000003241 I 0.724
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.817
PHUM617090 Pediculus humanus PHUM617090 I 0.756
Q2VIP1_9PRIM Gorilla gorilla ENSGGOG00000006785 I 0.704
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.824
Q6GR16 Xenopus laevis Q6GR16 I 0.810
Q6IP09 Xenopus laevis Q6IP09 I 0.875
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.986
Q98SP8 Xenopus laevis Q98SP8 I 0.799
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.943
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.849
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.785
XM_001379460.1 Monodelphis domestica ENSMODG00000015024 I 0.731
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.722
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.722
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.875
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.875