CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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pabpc4
(
Danio rerio
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSDARG00000059259
T36186_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
PABPC4
M042_0.6
Homo sapiens
AAAAAAR
RNAcompete
Ray et al.(2013)
RNCMPT00043
0.921
PABPC1
M349_0.6
Homo sapiens
ACDAAYM
SELEX
Cook et al.(2011)
950_7908267
0.878
PABPC1
M275_0.6
Homo sapiens
AAAAA
SELEX
Cook et al.(2011)
24_7908267
0.878
PABPC1
M146_0.6
Homo sapiens
ARAAAAM
RNAcompete
Ray et al.(2013)
RNCMPT00155
0.878
PABPC3
M144_0.6
Homo sapiens
RAAAACM
RNAcompete
Ray et al.(2013)
RNCMPT00153
0.814
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDARP00000076763
RRM
14
84
LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVVKGKPIR
ENSDARP00000076763
RRM
102
170
VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVF
ENSDARP00000076763
RRM
194
263
VYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVF
ENSDARP00000076763
RRM
297
365
LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY
Links
Other
RRM
family RBPs
Other
Danio rerio
RBPs
165 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Tc00.1047053469785.40
Trypanosoma cruzi
Tc00.1047053469785.40
N
0.000