Cucsa.142200 (Cucumis sativus)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 Cucsa.142200 T62347_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.142200.1 YTH 508 598
Cucsa.142200.2 YTH 507 597
Cucsa.142200.3 YTH 507 597
Cucsa.142200.4 YTH 508 596
Cucsa.142200.5 YTH 478 568
Cucsa.142200.6 YTH 508 598
Cucsa.142200.7 YTH 439 529
Cucsa.142200.8 YTH 439 529

Links

Other YTH family RBPs
Other Cucumis sativus RBPs

167 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PK28027.1 Cannabis sativa PK28027.1 I 0.000
Cucsa.301810 Cucumis sativus Cucsa.301810 I 0.000
Glyma13g41500.1 Glycine max Glyma13g41500.1 I 0.000
Glyma11g14150.1 Glycine max Glyma11g14150.1 N 0.000
MDP0000276227 Malus x domestica MDP0000276227 I 0.000
MDP0000123414 Malus x domestica MDP0000123414 N 0.000
cassava2135.valid.m1 Manihot esculenta cassava2135.valid.m1 I 0.000
Medtr2g117480 Medicago truncatula Medtr2g117480 I 0.000
mgf023806m Mimulus guttatus mgf023806m I 0.000
B9HNV7_POPTR Populus trichocarpa POPTR_0009s05920 I 0.000
ppa005940m Prunus persica ppa005940m I 0.000
30169.m006434 Ricinus communis 30169.m006434 I 0.000
SB01G045570 Sorghum bicolor Sb01g045570 I 0.000
GSVIVG00025280001 Vitis vinifera GSVIVG00025280001 I 0.000
GRMZM2G142557 Zea mays GRMZM2G142557 I 0.000