CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSMMUG00000008337
(
Macaca mulatta
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMMUG00000008337
T38867_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPA1
M312_0.6
Homo sapiens
Sequence logo not available
UAGGGW
RIP-chip
Cook et al.(2011)
560_17925491
0.859
HNRNPA1
M271_0.6
Homo sapiens
UAGGGW
SELEX
Cook et al.(2011)
23_7510636
0.859
HNRNPA1
M022_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00022
0.859
HNRNPA1L2
M023_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00023
0.838
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMMUP00000010934
RRM
16
84
LFIGGLSFETADESLRSHFEQWGTLTDCAVMRDPNTKLRGFGFVTYATVEEVDAAMDARPHKVDGRVME
ENSMMUP00000010934
RRM
107
174
FIGGIKEDSEEHHIRDFAQYGKIEVIEIMTDQGSGKKRDFAFVTFDDHDSVDKTVIQKYHTVNGHNCE
Links
Other
RRM
family RBPs
Other
Macaca mulatta
RBPs
275 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R011792
Ailuropoda melanoleuca
Ame_R011792
I
0.814
ENSACAG00000007169
Anolis carolinensis
ENSACAG00000007169
I
0.800
ROA1_BOVIN
Bos taurus
ENSBTAG00000001553
I
0.814
LOC785445
Bos taurus
ENSBTAG00000025621
I
0.766
XM_844664.1
Canis familiaris
ENSCAFG00000000687
I
0.796
ENSCAFG00000001973
Canis familiaris
ENSCAFG00000001973
I
0.790
ENSCAFG00000003418
Canis familiaris
ENSCAFG00000003418
I
0.761
ENSCAFG00000004202
Canis familiaris
ENSCAFG00000004202
I
0.778
XM_854536.1
Canis familiaris
ENSCAFG00000005046
I
0.779
XM_534786.2
Canis familiaris
ENSCAFG00000006580
I
0.814
ENSCAFG00000006663
Canis familiaris
ENSCAFG00000006663
I
0.782
ENSCAFG00000006784
Canis familiaris
ENSCAFG00000006784
I
0.779
ENSCAFG00000007879
Canis familiaris
ENSCAFG00000007879
I
0.766
ENSCAFG00000008379
Canis familiaris
ENSCAFG00000008379
I
0.779
ENSCAFG00000009606
Canis familiaris
ENSCAFG00000009606
I
0.723
ENSCAFG00000010153
Canis familiaris
ENSCAFG00000010153
I
0.800
ENSCAFG00000011035
Canis familiaris
ENSCAFG00000011035
I
0.792
ENSCAFG00000013303
Canis familiaris
ENSCAFG00000013303
I
0.757
ENSCAFG00000014691
Canis familiaris
ENSCAFG00000014691
I
0.814
ENSCAFG00000017316
Canis familiaris
ENSCAFG00000017316
I
0.810
ENSCAFG00000017494
Canis familiaris
ENSCAFG00000017494
I
0.764
ENSCAFG00000019104
Canis familiaris
ENSCAFG00000019104
I
0.757
XM_852631.1
Canis familiaris
ENSCAFG00000023680
I
0.779
ENSCJAG00000001353
Callithrix jacchus
ENSCJAG00000001353
I
0.804
LOC100409067
Callithrix jacchus
ENSCJAG00000003245
I
0.807
LOC100397230
Callithrix jacchus
ENSCJAG00000004031
I
0.807
ENSCJAG00000004902
Callithrix jacchus
ENSCJAG00000004902
I
0.779
LOC100413454
Callithrix jacchus
ENSCJAG00000009030
I
0.800
ENSCJAG00000016375
Callithrix jacchus
ENSCJAG00000016375
I
0.766
LOC100397230
Callithrix jacchus
ENSCJAG00000018864
I
0.814
ENSCJAG00000019479
Callithrix jacchus
ENSCJAG00000019479
I
0.814
LOC100410389
Callithrix jacchus
ENSCJAG00000023392
I
0.786
ENSCJAG00000031552
Callithrix jacchus
ENSCJAG00000031552
I
0.786
ENSCJAG00000033856
Callithrix jacchus
ENSCJAG00000033856
I
0.814
ENSCPOG00000021077
Cavia porcellus
ENSCPOG00000021077
I
0.800
ENSDNOG00000009228
Dasypus novemcinctus
ENSDNOG00000009228
I
0.814
LOC100054206
Equus caballus
ENSECAG00000006699
I
0.799
Q6DTK6_HORSE
Equus caballus
ENSECAG00000008676
I
0.814
ENSEEUG00000000494
Erinaceus europaeus
ENSEEUG00000000494
I
0.786
ENSEEUG00000006130
Erinaceus europaeus
ENSEEUG00000006130
I
0.800
ENSFCAG00000010150
Felis catus
ENSFCAG00000010150
I
0.814
HNRNPA1
Homo sapiens
ENSG00000135486
D
0.814
HNRNPA1L2
Homo sapiens
ENSG00000139675
D
0.793
ENSG00000215492
Homo sapiens
ENSG00000215492
I
0.814
ENSG00000231942
Homo sapiens
ENSG00000231942
I
0.807
HNRNPA1
Gorilla gorilla
ENSGGOG00000003040
I
0.814
ENSGGOG00000024290
Gorilla gorilla
ENSGGOG00000024290
I
0.764
ENSGGOG00000025381
Gorilla gorilla
ENSGGOG00000025381
I
0.814
ENSLAFG00000026657
Loxodonta africana
ENSLAFG00000026657
I
0.800
ENSLAFG00000029587
Loxodonta africana
ENSLAFG00000029587
I
0.807
ENSLAFG00000030769
Loxodonta africana
ENSLAFG00000030769
I
0.772
ENSMLUG00000000648
Myotis lucifugus
ENSMLUG00000000648
I
0.814
ENSMLUG00000000788
Myotis lucifugus
ENSMLUG00000000788
I
0.778
ENSMLUG00000003232
Myotis lucifugus
ENSMLUG00000003232
I
0.800
ENSMMUG00000005750
Macaca mulatta
ENSMMUG00000005750
I
0.750
LOC710473
Macaca mulatta
ENSMMUG00000007887
I
0.814
LOC710473
Macaca mulatta
ENSMMUG00000007928
I
0.793
XR_011984.1
Macaca mulatta
ENSMMUG00000011640
I
0.813
LOC710473
Macaca mulatta
ENSMMUG00000012989
I
0.814
XR_010472.1
Macaca mulatta
ENSMMUG00000012991
I
0.769
ENSMMUG00000013424
Macaca mulatta
ENSMMUG00000013424
I
0.787
ENSMMUG00000022448
Macaca mulatta
ENSMMUG00000022448
I
0.787
LOC710473
Macaca mulatta
ENSMMUG00000029402
I
0.807
ROA1_MACMU
Macaca mulatta
ENSMMUG00000031613
I
0.807
ENSMMUG00000031948
Macaca mulatta
ENSMMUG00000031948
I
0.772
ENSMUSG00000021927
Mus musculus
ENSMUSG00000021927
I
0.793
Hnrnpa1
Mus musculus
ENSMUSG00000046434
I
0.814
ENSOCUG00000010985
Oryctolagus cuniculus
ENSOCUG00000010985
I
0.800
ENSOCUG00000013350
Oryctolagus cuniculus
ENSOCUG00000013350
I
0.814
ENSOCUG00000021006
Oryctolagus cuniculus
ENSOCUG00000021006
I
0.779
ENSOCUG00000021007
Oryctolagus cuniculus
ENSOCUG00000021007
I
0.800
ENSOCUG00000022568
Oryctolagus cuniculus
ENSOCUG00000022568
I
0.814
ENSOCUG00000022668
Oryctolagus cuniculus
ENSOCUG00000022668
I
0.793
ENSOCUG00000023322
Oryctolagus cuniculus
ENSOCUG00000023322
I
0.807
ENSOCUG00000023444
Oryctolagus cuniculus
ENSOCUG00000023444
I
0.807
ENSOCUG00000023674
Oryctolagus cuniculus
ENSOCUG00000023674
I
0.814
ENSOCUG00000028124
Oryctolagus cuniculus
ENSOCUG00000028124
I
0.814
ENSOGAG00000009945
Otolemur garnettii
ENSOGAG00000009945
I
0.807
ENSOPRG00000006107
Ochotona princeps
ENSOPRG00000006107
I
0.807
ENSPPYG00000003855
Pongo pygmaeus
ENSPPYG00000003855
I
0.779
ENSPPYG00000017853
Pongo pygmaeus
ENSPPYG00000017853
I
0.793
ROA1_PANTR
Pan troglodytes
ENSPTRG00000005035
I
0.814
ROA1_PANTR
Pan troglodytes
ENSPTRG00000028756
I
0.814
ROA1_PANTR
Pan troglodytes
ENSPTRG00000031363
I
0.814
HNRNPA1L2
Pan troglodytes
ENSPTRG00000032520
I
0.814
ENSPVAG00000000322
Pteropus vampyrus
ENSPVAG00000000322
I
0.814
D4A2D2_RAT
Rattus norvegicus
ENSRNOG00000021986
I
0.759
D4AD23_RAT
Rattus norvegicus
ENSRNOG00000025891
I
0.771
D4A491_RAT
Rattus norvegicus
ENSRNOG00000029531
I
0.786
D4ABW2_RAT
Rattus norvegicus
ENSRNOG00000032168
I
0.746
Hnrnpa1
Rattus norvegicus
ENSRNOG00000036839
I
0.814
ENSRNOG00000039436
Rattus norvegicus
ENSRNOG00000039436
I
0.786
ENSSSCG00000000288
Sus scrofa
ENSSSCG00000000288
I
0.814
ENSTBEG00000008238
Tupaia belangeri
ENSTBEG00000008238
I
0.814
ENSTBEG00000016272
Tupaia belangeri
ENSTBEG00000016272
I
0.786
ENSTTRG00000004505
Tursiops truncatus
ENSTTRG00000004505
I
0.814
hnrnpa1
Xenopus tropicalis
ENSXETG00000021277
I
0.752