HNRNPA3 (Sus scrofa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSSSCG00000015988 T41529_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.879
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.879
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.879
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.857
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.800
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000016940 RRM 37 106
ENSSSCP00000016940 RRM 128 197

Links

Other RRM family RBPs
Other Sus scrofa RBPs

292 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.851
HNRNPA1 Homo sapiens ENSG00000135486 D 0.872
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.810
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.755
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.851
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.872
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.714
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.712
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.748
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.872
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.000
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.796
ENSMODG00000002376 Monodelphis domestica ENSMODG00000002376 I 0.000
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.741
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.865
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.858
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.851
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.872
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.865
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.872
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.851
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.762
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.705
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.851
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.865
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.879
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.858
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.768
ENSGGOG00000027762 Gorilla gorilla ENSGGOG00000027762 I 0.000
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.782
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.858
ENSGGOG00000024290 Gorilla gorilla ENSGGOG00000024290 I 0.000
ENSGGOG00000022797 Gorilla gorilla ENSGGOG00000022797 I 0.000
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.837
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.865
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.762
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.817
ENSMMUG00000005750 Macaca mulatta ENSMMUG00000005750 I 0.000
ENSMMUG00000004528 Macaca mulatta ENSMMUG00000004528 I 0.000
ENSMMUG00000004182 Macaca mulatta ENSMMUG00000004182 I 0.700
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.858
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.790
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.872
ENSMICG00000012083 Microcebus murinus ENSMICG00000012083 I 0.000
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.872
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.844
P17130 Xenopus laevis P17130 I 0.823
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.824
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.796
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.872
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.782
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.872
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.794
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.837
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.872
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.818
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.872
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.844
CBU92546 Xenopus laevis CBU92546 I 0.837
CBU92428 Xenopus laevis CBU92428 I 0.823
CBF67672 Xenopus laevis CBF67672 I 0.837
CBF67555 Xenopus laevis CBF67555 I 0.823
AAH72090 Xenopus laevis AAH72090 I 0.837
AAH45260 Xenopus laevis AAH45260 I 0.837
AAA49742 Xenopus laevis AAA49742 I 0.823
AAA49741 Xenopus laevis AAA49741 I 0.823
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.872
D4ABW2_RAT Rattus norvegicus ENSRNOG00000032168 I 0.000
ENSRNOG00000031316 Rattus norvegicus ENSRNOG00000031316 I 0.000
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.837
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.000
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.766
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.865
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.000
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.851
ENSOGAG00000002398 Otolemur garnettii ENSOGAG00000002398 I 0.000
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.858
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.872
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.865
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.830
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.872
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.796
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.823
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.782
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.796
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.830
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.872
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.872
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.872
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.872
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.858
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.837
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.844
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.000
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.797
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.858
ENSCAFG00000009606 Canis familiaris ENSCAFG00000009606 I 0.000
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.717
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.705
ENSCAFG00000007918 Canis familiaris ENSCAFG00000007918 I 0.000
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.771
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.765
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.733
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.790
ENSCAFG00000023056 Canis familiaris ENSCAFG00000023056 I 0.000
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.769
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.785
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.776
ENSCAFG00000018580 Canis familiaris ENSCAFG00000018580 I 0.000
ENSCAFG00000018456 Canis familiaris ENSCAFG00000018456 I 0.000
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.762
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.000
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.757
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.830
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.703
ENSCAFG00000002232 Canis familiaris ENSCAFG00000002232 I 0.000
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.748
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.782
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.755
ENSCAFG00000000746 Canis familiaris ENSCAFG00000000746 I 0.000
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.703
LOC785445 Bos taurus ENSBTAG00000025621 I 0.831
ENSBTAG00000009937 Bos taurus ENSBTAG00000009937 I 0.000
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.872
ENSCAFG00000003418 Canis familiaris ENSCAFG00000003418 I 0.000
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.748
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.810
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.872
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.823
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.710
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.743
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.768
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.755
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.830
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.776
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.879
ENSCAFG00000024636 Canis familiaris ENSCAFG00000024636 I 0.000
ENSG00000231942 Homo sapiens ENSG00000231942 I 0.000
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.851
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.796
ENSCJAG00000034783 Callithrix jacchus ENSCJAG00000034783 I 0.000
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.872
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.766
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.816
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.844
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.851
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.775
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.872
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.794
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.872
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.872
ENSETEG00000018059 Echinops telfairi ENSETEG00000018059 I 0.000
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.796
ENSETEG00000001872 Echinops telfairi ENSETEG00000001872 I 0.000
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.858
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.830
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.872
LOC100054206 Equus caballus ENSECAG00000006699 I 0.783
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.872
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.872
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.865
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.851
ENSCJAG00000002606 Callithrix jacchus ENSCJAG00000002606 I 0.000
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.768
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.797
ENSCJAG00000001302 Callithrix jacchus ENSCJAG00000001302 I 0.727
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.796
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.768
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.757
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.817
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.715
ENSCJAG00000017130 Callithrix jacchus ENSCJAG00000017130 I 0.768
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.789
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.803
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.810
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.816
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.851
ENSCJAG00000007639 Callithrix jacchus ENSCJAG00000007639 I 0.710
ENSCJAG00000007634 Callithrix jacchus ENSCJAG00000007634 I 0.000
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.768
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.734