PABPC3 (Gasterosteus aculeatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSGACG00000003572 T37412_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.946
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.946
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.946
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.889
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.842
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000004681 RRM 13 83
ENSGACP00000004681 RRM 101 169
ENSGACP00000004681 RRM 193 262
ENSGACP00000004681 RRM 296 364
ENSGACP00000004697 RRM 13 83
ENSGACP00000004697 RRM 101 169
ENSGACP00000004697 RRM 193 262
ENSGACP00000004697 RRM 296 364

Links

Other RRM family RBPs
Other Gasterosteus aculeatus RBPs

170 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAA49949 Xenopus laevis AAA49949 I 0.000
AAA49950 Xenopus laevis AAA49950 I 0.000
AAI69881 Xenopus laevis AAI69881 I 0.000
Ame_R015370 Ailuropoda melanoleuca Ame_R015370 I 0.000
CBF67578 Xenopus laevis CBF67578 I 0.000
CBU92451 Xenopus laevis CBU92451 I 0.000
D3ZB90_RAT Rattus norvegicus ENSRNOG00000038392 N 0.000
D3ZB98_RAT Rattus norvegicus ENSRNOG00000029641 I 0.000
D3ZK54_RAT Rattus norvegicus ENSRNOG00000025482 I 0.000
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.000
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.000
D3ZX95_RAT Rattus norvegicus ENSRNOG00000027006 I 0.000
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.000
D4A6Z0_RAT Rattus norvegicus ENSRNOG00000042924 N 0.000
D4A8U2_RAT Rattus norvegicus ENSRNOG00000007252 I 0.000
D4ACP9_RAT Rattus norvegicus ENSRNOG00000021929 I 0.000
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.000
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.000
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.000
ENSCAFG00000023240 Canis familiaris ENSCAFG00000023240 I 0.000
ENSCJAG00000006928 Callithrix jacchus ENSCJAG00000006928 I 0.000
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.000
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.000
ENSDORG00000011155 Dipodomys ordii ENSDORG00000011155 I 0.000
ENSEEUG00000000925 Erinaceus europaeus ENSEEUG00000000925 I 0.000
ENSGGOG00000022020 Gorilla gorilla ENSGGOG00000022020 I 0.000
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.000
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.000
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.000
ENSMODG00000024570 Monodelphis domestica ENSMODG00000024570 I 0.000
ENSOCUG00000006431 Oryctolagus cuniculus ENSOCUG00000006431 I 0.000
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.000
ENSPPYG00000001326 Pongo pygmaeus ENSPPYG00000001326 I 0.000
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.000
ENSPPYG00000016683 Pongo pygmaeus ENSPPYG00000016683 I 0.000
ENSPTRG00000018253 Pan troglodytes ENSPTRG00000018253 I 0.000
ENSRNOG00000013650 Rattus norvegicus ENSRNOG00000013650 I 0.000
ENSRNOG00000022655 Rattus norvegicus ENSRNOG00000022655 N 0.000
ENSRNOG00000024652 Rattus norvegicus ENSRNOG00000024652 I 0.000
ENSRNOG00000030250 Rattus norvegicus ENSRNOG00000030250 I 0.000
ENSRNOG00000033211 Rattus norvegicus ENSRNOG00000033211 I 0.000
ENSRNOG00000042377 Rattus norvegicus ENSRNOG00000042377 I 0.000
ENSRNOG00000043173 Rattus norvegicus ENSRNOG00000043173 I 0.000
ENSSSCG00000015989 Sus scrofa ENSSSCG00000015989 I 0.000
ENSTTRG00000015563 Tursiops truncatus ENSTTRG00000015563 I 0.000
Gm8991 Mus musculus ENSMUSG00000059179 I 0.000
HNRNPA3 Loxodonta africana ENSLAFG00000027712 I 0.000
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.000
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.000
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.000
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.000
HNRNPA3 Homo sapiens ENSG00000170144 I 0.000
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.000
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.000
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.000
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.000
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.000
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.000
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.000
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.000
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.000
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.000
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.000
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.000
HNRNPA3 Canis familiaris ENSCAFG00000015889 I 0.000
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.000
HNRNPA3 Microcebus murinus ENSMICG00000005513 I 0.000
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.000
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.000
LOC100066794 Equus caballus ENSECAG00000023237 I 0.000
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.000
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.000
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.000
LOC781499 Bos taurus ENSBTAG00000021580 I 0.000
P51968 Xenopus laevis P51968 I 0.000
P51992 Xenopus laevis P51992 I 0.000
Q1KKS6_FUGRU Takifugu rubripes ENSTRUG00000017504 I 0.000
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.000