HNRPA3 (Gallus gallus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSGALG00000009250 T37675_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.871
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.871
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.871
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.850
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.793
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGALP00000015037 RRM 11 80
ENSGALP00000015037 RRM 102 171
ENSGALP00000028844 RRM 23 92
ENSGALP00000028844 RRM 114 183
ENSGALP00000037924 RRM 35 104
ENSGALP00000037924 RRM 126 195

Links

Other RRM family RBPs
Other Gallus gallus RBPs

292 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A6QP83_BOVIN Bos taurus ENSBTAG00000013072 N 0.000
AAH44277 Xenopus laevis AAH44277 I 0.000
AAH60400 Xenopus laevis AAH60400 N 0.000
AAH70981 Xenopus laevis AAH70981 I 0.000
AAI69815 Xenopus laevis AAI69815 I 0.000
AAN77161 Xenopus laevis AAN77161 I 0.000
Ame_R003042 Ailuropoda melanoleuca Ame_R003042 N 0.000
Ame_R010564 Ailuropoda melanoleuca Ame_R010564 I 0.000
ENSDARG00000007049 Danio rerio ENSDARG00000007049 N 0.000
ENSGACG00000016563 Gasterosteus aculeatus ENSGACG00000016563 I 0.000
ENSORLG00000003540 Oryzias latipes ENSORLG00000003540 I 0.000
ENSPPYG00000001219 Pongo pygmaeus ENSPPYG00000001219 I 0.000
ENSPPYG00000019693 Pongo pygmaeus ENSPPYG00000019693 N 0.000
ENSSSCG00000003767 Sus scrofa ENSSSCG00000003767 I 0.000
ENSSSCG00000003771 Sus scrofa ENSSSCG00000003771 I 0.000
ENSTRUG00000004615 Takifugu rubripes ENSTRUG00000004615 I 0.000
FUBP1 Spermophilus tridecemlineatus ENSSTOG00000014312 I 0.000
FUBP1 Macaca mulatta ENSMMUG00000002899 I 0.000
Fubp1 Mus musculus ENSMUSG00000028034 I 0.000
FUBP1 Vicugna pacos ENSVPAG00000004709 I 0.000
FUBP1 Oryctolagus cuniculus ENSOCUG00000002225 I 0.000
FUBP1 Otolemur garnettii ENSOGAG00000014233 I 0.000
FUBP1 Ochotona princeps ENSOPRG00000001175 N 0.000
fubp1 Xenopus tropicalis ENSXETG00000013137 I 0.000
FUBP1 Procavia capensis ENSPCAG00000012617 I 0.000
FUBP1 Tursiops truncatus ENSTTRG00000000096 I 0.000
FUBP1 Tarsius syrichta ENSTSYG00000000148 I 0.000
FUBP1 Pan troglodytes ENSPTRG00000000888 I 0.000
FUBP1 Taeniopygia guttata ENSTGUG00000006841 I 0.000
FUBP1 Myotis lucifugus ENSMLUG00000014802 I 0.000
FUBP1 Ornithorhynchus anatinus ENSOANG00000009777 I 0.000
FUBP1 Homo sapiens ENSG00000162613 I 0.000
FUBP1 Callithrix jacchus ENSCJAG00000007062 I 0.000
FUBP1 Cavia porcellus ENSCPOG00000002757 I 0.000
Fubp1 Dipodomys ordii ENSDORG00000016534 I 0.000
FUBP1 Gorilla gorilla ENSGGOG00000027554 I 0.000
FUBP1 Loxodonta africana ENSLAFG00000003273 I 0.000
FUBP1 Equus caballus ENSECAG00000010867 I 0.000
FUBP1 Choloepus hoffmanni ENSCHOG00000008177 I 0.000
FUBP1 Canis familiaris ENSCAFG00000020361 I 0.000
FUBP1 Anolis carolinensis ENSACAG00000006310 I 0.000
FUBP1 Meleagris gallopavo ENSMGAG00000009424 I 0.000
fubp1 Danio rerio ENSDARG00000029248 I 0.000
FUBP3 Sus scrofa ENSSSCG00000005702 N 0.000
FUBP3 Felis catus ENSFCAG00000005113 N 0.000
FUBP3 Dasypus novemcinctus ENSDNOG00000014533 N 0.000
FUBP3 Tetraodon nigroviridis ENSTNIG00000005858 N 0.000
FUBP3 Tetraodon nigroviridis ENSTNIG00000009019 N 0.000
FUBP3 Takifugu rubripes ENSTRUG00000013259 N 0.000
FUBP3 Taeniopygia guttata ENSTGUG00000004662 N 0.000
FUBP3 Microcebus murinus ENSMICG00000015452 N 0.000
fubp3 Xenopus tropicalis ENSXETG00000001344 N 0.000
FUBP3 Takifugu rubripes ENSTRUG00000018658 N 0.000
FUBP3 Canis familiaris ENSCAFG00000019942 N 0.000
Fubp3 Rattus norvegicus ENSRNOG00000009139 N 0.000
FUBP3 Pteropus vampyrus ENSPVAG00000001510 N 0.000
FUBP3 Myotis lucifugus ENSMLUG00000008743 N 0.000
FUBP3 Gorilla gorilla ENSGGOG00000011318 N 0.000
FUBP3 Otolemur garnettii ENSOGAG00000007555 N 0.000
FUBP3 Ornithorhynchus anatinus ENSOANG00000001042 N 0.000
FUBP3 Loxodonta africana ENSLAFG00000011611 N 0.000
Fubp3 Mus musculus ENSMUSG00000026843 N 0.000
FUBP3 Monodelphis domestica ENSMODG00000012105 N 0.000
FUBP3 Macaca mulatta ENSMMUG00000008249 N 0.000
FUBP3 Meleagris gallopavo ENSMGAG00000005342 N 0.000
FUBP3 Ochotona princeps ENSOPRG00000008648 N 0.000
FUBP3 Gasterosteus aculeatus ENSGACG00000000957 N 0.000
FUBP3 Oryzias latipes ENSORLG00000007103 N 0.000
FUBP3 Oryzias latipes ENSORLG00000017565 N 0.000
FUBP3 Procavia capensis ENSPCAG00000001717 N 0.000
FUBP3 Gasterosteus aculeatus ENSGACG00000016704 N 0.000
FUBP3 Pan troglodytes ENSPTRG00000021474 N 0.000
FUBP3 Cavia porcellus ENSCPOG00000010315 N 0.000
FUBP3 Homo sapiens ENSG00000107164 N 0.000
LOC100069755 Equus caballus ENSECAG00000011500 N 0.000
LOC100399862 Callithrix jacchus ENSCJAG00000020542 N 0.000
Q08DJ3_BOVIN Bos taurus ENSBTAG00000008926 I 0.000
Q5ZHW0_CHICK Gallus gallus ENSGALG00000008939 I 0.000
Q5ZM76_CHICK Gallus gallus ENSGALG00000003941 N 0.000