CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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HNRNPA3
(
Myotis lucifugus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMLUG00000003906
T38644_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPA1
M312_0.6
Homo sapiens
Sequence logo not available
UAGGGW
RIP-chip
Cook et al.(2011)
560_17925491
0.879
HNRNPA1
M271_0.6
Homo sapiens
UAGGGW
SELEX
Cook et al.(2011)
23_7510636
0.879
HNRNPA1
M022_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00022
0.879
HNRNPA1L2
M023_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00023
0.857
HNRNPA2B1
M024_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00024
0.800
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMLUP00000003559
RRM
13
82
LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVE
ENSMLUP00000003559
RRM
104
173
IFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCE
Links
Other
RRM
family RBPs
Other
Myotis lucifugus
RBPs
292 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC_Os01g24400
Oryza sativa
LOC_Os01g24400
N
0.000
LOC_Os01g27550
Oryza sativa
LOC_Os01g27550
N
0.000
LOC_Os01g61490
Oryza sativa
LOC_Os01g61490
N
0.000
LOC_Os02g10270
Oryza sativa
LOC_Os02g10270
N
0.000
LOC_Os02g13750
Oryza sativa
LOC_Os02g13750
N
0.000
LOC_Os02g29260
Oryza sativa
LOC_Os02g29260
N
0.000
LOC_Os02g34350
Oryza sativa
LOC_Os02g34350
N
0.000
LOC_Os02g45680
Oryza sativa
LOC_Os02g45680
N
0.000
LOC_Os03g32600
Oryza sativa
LOC_Os03g32600
N
0.000
LOC_Os04g01439
Oryza sativa
LOC_Os04g01439
N
0.000
LOC_Os04g20840
Oryza sativa
LOC_Os04g20840
N
0.000
LOC_Os04g26290
Oryza sativa
LOC_Os04g26290
N
0.000
LOC_Os04g32750
Oryza sativa
LOC_Os04g32750
N
0.000
LOC_Os05g02270
Oryza sativa
LOC_Os05g02270
N
0.000
LOC_Os05g13730
Oryza sativa
LOC_Os05g13730
N
0.000
LOC_Os05g17540
Oryza sativa
LOC_Os05g17540
N
0.000
LOC_Os05g19550
Oryza sativa
LOC_Os05g19550
N
0.000
LOC_Os05g44870
Oryza sativa
LOC_Os05g44870
N
0.000
LOC_Os06g11460
Oryza sativa
LOC_Os06g11460
N
0.000
LOC_Os06g39920
Oryza sativa
LOC_Os06g39920
N
0.000
LOC_Os07g19200
Oryza sativa
LOC_Os07g19200
N
0.000
LOC_Os07g20560
Oryza sativa
LOC_Os07g20560
N
0.000
LOC_Os07g23220
Oryza sativa
LOC_Os07g23220
N
0.000
LOC_Os09g07850
Oryza sativa
LOC_Os09g07850
N
0.000
LOC_Os10g01600
Oryza sativa
LOC_Os10g01600
N
0.000
LOC_Os10g03070
Oryza sativa
LOC_Os10g03070
N
0.000
LOC_Os10g13410
Oryza sativa
LOC_Os10g13410
N
0.000
LOC_Os10g22230
Oryza sativa
LOC_Os10g22230
N
0.000
LOC_Os10g32124
Oryza sativa
LOC_Os10g32124
N
0.000
LOC_Os12g12450
Oryza sativa
LOC_Os12g12450
N
0.000
LOC_Os12g15580
Oryza sativa
LOC_Os12g15580
N
0.000
LOC_Os12g22180
Oryza sativa
LOC_Os12g22180
N
0.000
LOC_Os12g29900
Oryza sativa
LOC_Os12g29900
N
0.000
LOC_Os12g37810
Oryza sativa
LOC_Os12g37810
N
0.000