CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSCAFG00000002059
(
Canis familiaris
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSCAFG00000002059
T34987_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPA1
M312_0.6
Homo sapiens
Sequence logo not available
UAGGGW
RIP-chip
Cook et al.(2011)
560_17925491
0.908
HNRNPA1
M271_0.6
Homo sapiens
UAGGGW
SELEX
Cook et al.(2011)
23_7510636
0.908
HNRNPA1
M022_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00022
0.908
HNRNPA1L2
M023_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00023
0.887
HNRNPA2B1
M024_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00024
0.752
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCAFP00000031484
RRM
9
77
LFIGGLNFETTDEGLRSHFEQWGMLTDCVVMRDPRKYSRGFGFVTYATIEEVDAAMNARPHKVDGRVVE
ENSCAFP00000031484
RRM
99
167
IFVGIKEDTEEHHLRDYFEQYGKIEVIEIMTDQGSGKKRVFAFVTFDDHDSVGKIVIQKYHTVNGHNCE
Links
Other
RRM
family RBPs
Other
Canis familiaris
RBPs
246 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BRADI1G74820
Brachypodium distachyon
BRADI1G74820
N
0.000
cassava37705.valid.m1
Manihot esculenta
cassava37705.valid.m1
N
0.000
LOC_Os03g05830
Oryza sativa
LOC_Os03g05830
N
0.000
LOC_Os10g30370
Oryza sativa
LOC_Os10g30370
N
0.000
PDK_20s1450251g001
Phoenix dactylifera
PDK_20s1450251g001
N
0.000
estExt_fgenesh1_pg.C_2070055
Physcomitrella patens
estExt_fgenesh1_pg.C_2070055
N
0.000
estExt_gwp_gw1.C_3320014
Physcomitrella patens
estExt_gwp_gw1.C_3320014
N
0.000
B9H1K1_POPTR
Populus trichocarpa
POPTR_0004s18320
N
0.000
POPTR_0009s13940
Populus trichocarpa
POPTR_0009s13940
N
0.000
30183.m001297
Ricinus communis
30183.m001297
N
0.000
GSVIVG00023998001
Vitis vinifera
GSVIVG00023998001
N
0.000