ENSCAFG00000002059 (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000002059 T34987_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.908
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.908
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.908
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.887
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.752
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000031484 RRM 9 77
ENSCAFP00000031484 RRM 99 167

Links

Other RRM family RBPs
Other Canis familiaris RBPs

246 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BRADI1G74820 Brachypodium distachyon BRADI1G74820 N 0.000
cassava37705.valid.m1 Manihot esculenta cassava37705.valid.m1 N 0.000
LOC_Os03g05830 Oryza sativa LOC_Os03g05830 N 0.000
LOC_Os10g30370 Oryza sativa LOC_Os10g30370 N 0.000
PDK_20s1450251g001 Phoenix dactylifera PDK_20s1450251g001 N 0.000
estExt_fgenesh1_pg.C_2070055 Physcomitrella patens estExt_fgenesh1_pg.C_2070055 N 0.000
estExt_gwp_gw1.C_3320014 Physcomitrella patens estExt_gwp_gw1.C_3320014 N 0.000
B9H1K1_POPTR Populus trichocarpa POPTR_0004s18320 N 0.000
POPTR_0009s13940 Populus trichocarpa POPTR_0009s13940 N 0.000
30183.m001297 Ricinus communis 30183.m001297 N 0.000
GSVIVG00023998001 Vitis vinifera GSVIVG00023998001 N 0.000