ENSCAFG00000002059 (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000002059 T34987_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.908
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.908
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.908
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.887
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.752
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000031484 RRM 9 77
ENSCAFP00000031484 RRM 99 167

Links

Other RRM family RBPs
Other Canis familiaris RBPs

246 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.821
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.901
Ame_R000626 Ailuropoda melanoleuca Ame_R000626 I 0.000
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.887
LOC785445 Bos taurus ENSBTAG00000025621 I 0.886
ENSBTAG00000009937 Bos taurus ENSBTAG00000009937 I 0.000
ROA2_BOVIN Bos taurus ENSBTAG00000005726 I 0.000
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.901
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.829
ENSCJAG00000007634 Callithrix jacchus ENSCJAG00000007634 I 0.733
ENSCJAG00000007639 Callithrix jacchus ENSCJAG00000007639 I 0.750
LOC100401647 Callithrix jacchus ENSCJAG00000007908 I 0.000
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.879
ENSCJAG00000005407 Callithrix jacchus ENSCJAG00000005407 I 0.721
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.736
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.851
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.894
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.887
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.821
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.824
ENSCJAG00000001302 Callithrix jacchus ENSCJAG00000001302 I 0.782
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.837
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.857
ENSCJAG00000015222 Callithrix jacchus ENSCJAG00000015222 I 0.000
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.850
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.901
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.821
ENSCJAG00000032970 Callithrix jacchus ENSCJAG00000032970 I 0.800
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.851
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.872
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.872
ENSCJAG00000021872 Callithrix jacchus ENSCJAG00000021872 I 0.000
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.836
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.901
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.901
ENSCJAG00000017130 Callithrix jacchus ENSCJAG00000017130 I 0.814
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.857
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.871
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.857
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.755
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.745
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.837
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.901
ENSCAFG00000018456 Canis familiaris ENSCAFG00000018456 I 0.714
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.850
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.721
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.858
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.830
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.811
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.810
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.797
ENSCAFG00000005307 Canis familiaris ENSCAFG00000005307 I 0.000
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.843
ENSCAFG00000000746 Canis familiaris ENSCAFG00000000746 I 0.000
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.796
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.796
HNRNPA2B1 Canis familiaris ENSCAFG00000002885 I 0.000
ENSCAFG00000003418 Canis familiaris ENSCAFG00000003418 I 0.721
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.782
ENSCAFG00000003921 Canis familiaris ENSCAFG00000003921 I 0.000
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.858
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.803
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.745
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.836
ENSCAFG00000020428 Canis familiaris ENSCAFG00000020428 I 0.000
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.803
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.811
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.810
ENSCAFG00000019097 Canis familiaris ENSCAFG00000019097 I 0.709
ENSCAFG00000018580 Canis familiaris ENSCAFG00000018580 I 0.000
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.817
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.824
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.731
ENSCAFG00000017448 Canis familiaris ENSCAFG00000017448 I 0.000
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.762
ENSCAFG00000023056 Canis familiaris ENSCAFG00000023056 I 0.710
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.872
ENSCAFG00000009606 Canis familiaris ENSCAFG00000009606 I 0.000
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.887
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.729
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.831
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.717
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.829
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.766
ENSCAFG00000007918 Canis familiaris ENSCAFG00000007918 I 0.000
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.850
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.797
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.775
ENSCAFG00000024636 Canis familiaris ENSCAFG00000024636 I 0.000
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.872
HNRNPA2B1 Dasypus novemcinctus ENSDNOG00000012928 I 0.000
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.901
Hnrnpa2b1 Dipodomys ordii ENSDORG00000005482 I 0.000
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.809
HNRNPA2B1 Echinops telfairi ENSETEG00000018577 I 0.000
ENSETEG00000018059 Echinops telfairi ENSETEG00000018059 I 0.000
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.829
ENSETEG00000001872 Echinops telfairi ENSETEG00000001872 I 0.714
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.901
LOC100054206 Equus caballus ENSECAG00000006699 I 0.824
LOC100068539 Equus caballus ENSECAG00000000782 I 0.000
ENSEEUG00000011837 Erinaceus europaeus ENSEEUG00000011837 I 0.807
ENSEEUG00000009941 Erinaceus europaeus ENSEEUG00000009941 I 0.800
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.894
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.865
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.901
Q5ZME1_CHICK Gallus gallus ENSGALG00000011036 I 0.000
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.816
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.836
ENSGGOG00000027762 Gorilla gorilla ENSGGOG00000027762 I 0.000
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.857
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.901
ENSGGOG00000025265 Gorilla gorilla ENSGGOG00000025265 I 0.821
ENSGGOG00000024290 Gorilla gorilla ENSGGOG00000024290 I 0.000
ENSGGOG00000022797 Gorilla gorilla ENSGGOG00000022797 I 0.000
HNRNPA2B1 Gorilla gorilla ENSGGOG00000017072 I 0.000
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.901
HNRNPA1 Homo sapiens ENSG00000135486 D 0.901
HNRNPA2B1 Homo sapiens ENSG00000122566 D 0.000
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.879
ENSG00000231942 Homo sapiens ENSG00000231942 I 0.717
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.901
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.887
HNRNPA2B1 Loxodonta africana ENSLAFG00000006902 I 0.000
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.858
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.894
ENSLAFG00000029171 Loxodonta africana ENSLAFG00000029171 I 0.748
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.879
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.901
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.796
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.759
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.807
ENSMMUG00000022219 Macaca mulatta ENSMMUG00000022219 I 0.000
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.740
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.894
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.879
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.803
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.864
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.894
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.864
ENSMMUG00000005750 Macaca mulatta ENSMMUG00000005750 I 0.717
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.752
ENSMMUG00000001417 Macaca mulatta ENSMMUG00000001417 I 0.000
HNRNPA2B1 Macaca mulatta ENSMMUG00000003619 I 0.000
ENSMMUG00000004182 Macaca mulatta ENSMMUG00000004182 I 0.738
ENSMMUG00000004528 Macaca mulatta ENSMMUG00000004528 I 0.743
ENSMEUG00000014479 Macropus eugenii ENSMEUG00000014479 I 0.000
ENSMEUG00000001084 Macropus eugenii ENSMEUG00000001084 I 0.000
HNRNPA2B1 Meleagris gallopavo ENSMGAG00000010635 I 0.000
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.859
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.782
ENSMICG00000012083 Microcebus murinus ENSMICG00000012083 I 0.000
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.789
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.781
ENSMODG00000002376 Monodelphis domestica ENSMODG00000002376 I 0.000
HNRNPA2B1 Monodelphis domestica ENSMODG00000000603 I 0.000
Hnrnpa2b1 Mus musculus ENSMUSG00000004980 I 0.000
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.872
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.901
HNRNPA2B1 Myotis lucifugus ENSMLUG00000007578 I 0.000
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.887
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.824
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.901
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.894
HNRNPA2B1 Ornithorhynchus anatinus ENSOANG00000009159 I 0.000
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.894
HNRNPA2B1 Oryctolagus cuniculus ENSOCUG00000026859 I 0.000
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.901
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.894
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.887
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.887
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.901
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.865
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.901
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.857
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.879
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.901
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.801
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.894
ENSOGAG00000002398 Otolemur garnettii ENSOGAG00000002398 I 0.705
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.759
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.901
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.901
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.901
HNRNPA2B1 Pan troglodytes ENSPTRG00000019002 I 0.000
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.901
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.872
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.745
ENSPPYG00000017715 Pongo pygmaeus ENSPPYG00000017715 I 0.000
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.813
HNRNPA2B1 Pteropus vampyrus ENSPVAG00000006296 I 0.000
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.901
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.872
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.901
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.866
D4AB76_RAT Rattus norvegicus ENSRNOG00000032584 I 0.000
D4ABW2_RAT Rattus norvegicus ENSRNOG00000032168 I 0.719
ENSRNOG00000031316 Rattus norvegicus ENSRNOG00000031316 I 0.000
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.865
ENSRNOG00000029434 Rattus norvegicus ENSRNOG00000029434 I 0.000
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.843
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.851
Hnrnpa2b1 Rattus norvegicus ENSRNOG00000011175 I 0.000
ENSRNOG00000017651 Rattus norvegicus ENSRNOG00000017651 I 0.000
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.850
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.850
ENSRNOG00000023438 Rattus norvegicus ENSRNOG00000023438 I 0.793
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.851
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.809
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.863
ENSSTOG00000006202 Spermophilus tridecemlineatus ENSSTOG00000006202 I 0.000
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.901
HNRNPA2B1 Taeniopygia guttata ENSTGUG00000002869 I 0.000
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.773
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.901
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.886
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.879
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.901
HNRNPA2B1 Tursiops truncatus ENSTTRG00000000709 I 0.000
P17130 Xenopus laevis P17130 I 0.823
CBU92546 Xenopus laevis CBU92546 I 0.837
CBU92428 Xenopus laevis CBU92428 I 0.823
CBF67672 Xenopus laevis CBF67672 I 0.837
CBF67555 Xenopus laevis CBF67555 I 0.823
AAH72090 Xenopus laevis AAH72090 I 0.837
AAH45260 Xenopus laevis AAH45260 I 0.844
AAA49742 Xenopus laevis AAA49742 I 0.823
AAA49741 Xenopus laevis AAA49741 I 0.823
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.794
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.844