LOC100360986 (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000001556 T41008_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.879
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.879
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.879
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.857
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.800
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000002122 RRM 37 106
ENSRNOP00000002122 RRM 128 197
ENSRNOP00000041984 RRM 37 106
ENSRNOP00000041984 RRM 128 197

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

293 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s1009g5t1 Acyrtosiphon pisum DGIL_AUG5s1009g5t1 N 0.000
Ame_R008803 Ailuropoda melanoleuca Ame_R008803 N 0.000
AGAP007912 Anopheles gambiae AGAP007912 N 0.000
amel4_ncbi_hmm4445 Apis mellifera amel4_ncbi_hmm4445 N 0.000
ANIA_05875 Aspergillus nidulans CADANIAG00007161 N 0.000
An02g03350 Aspergillus niger CADANGAG00001848 N 0.000
ATEG_01441 Aspergillus terreus CADATEAG00000360 N 0.000
KRR1_BOVIN Bos taurus ENSBTAG00000011591 N 0.000
LOC100407700 Callithrix jacchus ENSCJAG00000001181 N 0.000
KRR1 Candida albicans orf19.661 N 0.000
Cd36_10710 Candida dubliniensis Cd36_10710 N 0.000
PGUG_03304 Candida guilliermondii PGUG_03304 N 0.000
CLUG_04903 Candida lusitaniae CLUG_04903 N 0.000
CPAG_00706 Candida parapsilosis CPAG_00706 N 0.000
CTRG_04103 Candida tropicalis CTRG_04103 N 0.000
XM_846783.1 Canis familiaris ENSCAFG00000005665 N 0.000
KRR1 Cavia porcellus ENSCPOG00000014353 N 0.000
pasa_Sanger_mRNA6968 Chlamydomonas reinhardtii pasa_Sanger_mRNA6968 N 0.000
estExt_fgenesh3_pg.C_140192 Chlorella NC64A estExt_fgenesh3_pg.C_140192 N 0.000
estExt_Genewise1Plus.C_20668 Chlorella vulgaris estExt_Genewise1Plus.C_20668 N 0.000
KRR1 Choloepus hoffmanni ENSCHOG00000009636 N 0.000
estExt_Genewise1.C_20589 Coccomyxa C 169 estExt_Genewise1.C_20589 N 0.000
KRR1 Danio rerio ENSDARG00000011246 N 0.000
KRR1 Dasypus novemcinctus ENSDNOG00000015614 N 0.000
DEHA0E14685g Debaryomyces hansenii DEHA0E14685g N 0.000
Krr1 Dipodomys ordii ENSDORG00000004614 N 0.000
GF14827 Drosophila ananassae FBgn0091854 N 0.000
GG24622 Drosophila erecta FBgn0116754 N 0.000
dbe Drosophila melanogaster FBgn0020305 N 0.000
GI18007 Drosophila mojavensis FBgn0140747 N 0.000
GL18627 Drosophila persimilis FBgn0156228 N 0.000
GA18062-RA Drosophila pseudoobscura FBgn0078070 N 0.000
GJ19628 Drosophila virilis FBgn0206770 N 0.000
GK24616 Drosophila willistoni FBgn0226576 N 0.000
GE15854 Drosophila yakuba FBgn0233416 N 0.000
LOC100050169 Equus caballus ENSECAG00000017498 N 0.000
KRR1 Erinaceus europaeus ENSEEUG00000001466 N 0.000
KRR1 Felis catus ENSFCAG00000005207 N 0.000
FVEG_06170 Fusarium verticillioides FVEG_06170 N 0.000
Q5ZKE0_CHICK Gallus gallus ENSGALG00000010227 N 0.000
KRR1 Gasterosteus aculeatus ENSGACG00000019481 N 0.000
KRR1 Gorilla gorilla ENSGGOG00000013596 N 0.000
KRR1 Homo sapiens ENSG00000111615 N 0.000
KLLA0C00506g Kluyveromyces lactis KLLA0C00506g N 0.000
KLTH0F00506g Kluyveromyces thermotolerans KLTH0F00506g N 0.000
Kwal_13011 Kluyveromyces waltii Kwal_13011 N 0.000
SAKL0C00484g Lachancea kluyveri SAKL0C00484g N 0.000
LELG_00899 Lodderomyces elongisporus LELG_00899 N 0.000
KRR1 Loxodonta africana ENSLAFG00000015986 N 0.000
KRR1 Macaca mulatta ENSMMUG00000009640 N 0.000
KRR1 Macropus eugenii ENSMEUG00000011365 N 0.000
KRR1 Meleagris gallopavo ENSMGAG00000010844 N 0.000
KRR1 Monodelphis domestica ENSMODG00000020451 N 0.000
estExt_fgenesh2_pg.C_210023 Monosiga brevicollis estExt_fgenesh2_pg.C_210023 N 0.000
e_gw1.1.604.1 Mucor circinelloides e_gw1.1.604.1 N 0.000
Krr1 Mus musculus ENSMUSG00000063334 N 0.000
nasonia_NCBI_hmm386444 Nasonia vitripennis nasonia_NCBI_hmm386444 N 0.000
KRR1 Ochotona princeps ENSOPRG00000011858 N 0.000
KRR1 Oryctolagus cuniculus ENSOCUG00000003925 N 0.000
KRR1 Oryzias latipes ENSORLG00000019616 N 0.000
KRR1 Otolemur garnettii ENSOGAG00000010313 N 0.000
XR_025480.1 Pan troglodytes ENSPTRG00000005238 N 0.000
PMAA_048600 Penicillium marneffei PMAA_048600 N 0.000
e_gwh1.2.1.2136.1 Pichia stipitis e_gwh1.2.1.2136.1 N 0.000
ENSPPYG00000004785 Pongo pygmaeus ENSPPYG00000004785 N 0.000
KRR1 Pteropus vampyrus ENSPVAG00000000529 N 0.000
Hrb2 Rattus norvegicus ENSRNOG00000004035 N 0.000
2380_YCL059C Saccharomyces bayanus 2380_YCL059C N 0.000
KRR1 Saccharomyces cerevisiae YCL059C N 0.000
Skud_Contig2065.14 Saccharomyces kudriavzevii Skud_Contig2065.14 N 0.000
2245_YCL059C Saccharomyces mikatae 2245_YCL059C N 0.000
2217_YCL059C Saccharomyces paradoxus 2217_YCL059C N 0.000
PTSG_07198 Salpingoeca rosetta PTSG_07198 N 0.000
e_gw1.35.542.1 Selaginella moellendorfii e_gw1.35.542.1 N 0.000
KRR1 Sorex araneus ENSSARG00000009967 N 0.000
KRR1 Spermophilus tridecemlineatus ENSSTOG00000003620 N 0.000
estExt_Genewise1Plus.C_20041 Sporobolomyces roseus estExt_Genewise1Plus.C_20041 N 0.000
XP_786725.1 Strongylocentrotus purpuratus XP_786725.1 N 0.000
XP_001186312.1 Strongylocentrotus purpuratus XP_001186312.1 N 0.000
KRR1 Sus scrofa ENSSSCG00000000520 N 0.000
KRR1 Takifugu rubripes ENSTRUG00000004380 N 0.000
KRR1 Tarsius syrichta ENSTSYG00000009394 N 0.000
GSTUMT00008009001 Tuber melanosporum GSTUMT00008009001 N 0.000
KRR1 Tupaia belangeri ENSTBEG00000008145 N 0.000
KRR1 Tursiops truncatus ENSTTRG00000001661 N 0.000
A7TFC5_VANPO Vanderwaltozyma polyspora A7TFC5_VANPO N 0.000
KRR1 Vicugna pacos ENSVPAG00000011750 N 0.000
estExt_fgenesh4_pg.C_90052 Volvox carteri estExt_fgenesh4_pg.C_90052 N 0.000
AAH41273 Xenopus laevis AAH41273 N 0.000
AAH72210 Xenopus laevis AAH72210 N 0.000
ZYRO0F18458g Zygosaccharomyces rouxii ZYRO0F18458g N 0.000