GSVIVG00025494001 (Vitis vinifera)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 GSVIVG00025494001 T62217_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GSVIVT00025494001 YTH 471 561

Links

Other YTH family RBPs
Other Vitis vinifera RBPs

168 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29889.m003364 Ricinus communis 29889.m003364 N 0.703
29890.m000285 Ricinus communis 29890.m000285 N 0.714
29929.m004643 Ricinus communis 29929.m004643 N 0.736
29950.m001140 Ricinus communis 29950.m001140 N 0.802
29955.m001158 Ricinus communis 29955.m001158 N 0.703
30169.m006347 Ricinus communis 30169.m006347 N 0.758
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.824
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.703
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.780
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.747
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.857
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.835
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.725
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.824
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.714
BGIOSIBCE012954 Oryza indica BGIOSIBCE012954 N 0.714
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.736
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.725
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.824
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.780
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.758
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.868
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.714
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.824
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.725
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.736
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.780
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.747
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.857
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.747
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.714
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.912
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.912
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.912
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.912
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.714
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.714
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.714
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.714
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.736
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.736
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.890
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.890
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.890
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.747
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.747
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.747
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.890
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.890
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.780
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.890
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.890
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.890
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.901
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.901
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.901
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.901
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.901
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.901
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.901
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.901
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.901
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.901
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.901
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.901
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.725
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.725
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.725
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.725
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.703
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.714
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.901
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.703
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.846
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.703
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.747
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.857
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.769
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.835
Glyma02g07920.1 Glycine max Glyma02g07920.1 N 0.780
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.824
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.714
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.835
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.703
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.703
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.714
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.703
Glyma16g04590.1 Glycine max Glyma16g04590.1 N 0.813
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.703
Glyma19g28710.1 Glycine max Glyma19g28710.1 N 0.813
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.758
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.846
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.868
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.725
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.857
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.736
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.846
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.769
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.725
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.703
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.725
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.725
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.824
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.703
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.703
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.725
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.824
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.714
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.857
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.780
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.725
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.824
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.780
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.758
MDP0000124048 Malus x domestica MDP0000124048 N 0.868
MDP0000129009 Malus x domestica MDP0000129009 N 0.868
MDP0000132385 Malus x domestica MDP0000132385 N 0.703
MDP0000171737 Malus x domestica MDP0000171737 N 0.736
MDP0000231231 Malus x domestica MDP0000231231 N 0.725
MDP0000248088 Malus x domestica MDP0000248088 N 0.714
MDP0000286471 Malus x domestica MDP0000286471 N 0.725
MDP0000287088 Malus x domestica MDP0000287088 N 0.725
MDP0000306387 Malus x domestica MDP0000306387 N 0.703
MDP0000405927 Malus x domestica MDP0000405927 N 0.725
MDP0000488588 Malus x domestica MDP0000488588 N 0.846
MDP0000552419 Malus x domestica MDP0000552419 N 0.714
MDP0000617859 Malus x domestica MDP0000617859 N 0.725
MDP0000718677 Malus x domestica MDP0000718677 N 0.879
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.791
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.714
Medtr6g030790 Medicago truncatula Medtr6g030790 N 0.780
Medtr6g030800 Medicago truncatula Medtr6g030800 N 0.780
Medtr7g100450 Medicago truncatula Medtr7g100450 N 0.791
mgf001716m Mimulus guttatus mgf001716m N 0.714
mgf009938m Mimulus guttatus mgf009938m N 0.879
mgf013853m Mimulus guttatus mgf013853m N 0.879
mgf013935m Mimulus guttatus mgf013935m N 0.857
mgf014829m Mimulus guttatus mgf014829m N 0.714
mgf019821m Mimulus guttatus mgf019821m N 0.703
mgf019846m Mimulus guttatus mgf019846m N 0.703
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.857
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.703
PK17832.1 Cannabis sativa PK17832.1 N 0.747
PK23716.1 Cannabis sativa PK23716.1 N 0.879
B9GLB9_POPTR Populus trichocarpa POPTR_0001s03940 N 0.736
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.725
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.846
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.736
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.725
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.725
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.703
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.703
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.736
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.703
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.802
ppa002483m Prunus persica ppa002483m N 0.725
ppa002588m Prunus persica ppa002588m N 0.725
ppa003664m Prunus persica ppa003664m N 0.736
ppa018635m Prunus persica ppa018635m N 0.703
SB01G005500 Sorghum bicolor Sb01g005500 N 0.846
SB01G008170 Sorghum bicolor Sb01g008170 N 0.868
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.846
SB02G003990 Sorghum bicolor Sb02g003990 N 0.846
SB03G031190 Sorghum bicolor Sb03g031190 N 0.736
SB06G027960 Sorghum bicolor Sb06g027960 N 0.780
SB07G006330 Sorghum bicolor Sb07g006330 N 0.780
SB07G024500 Sorghum bicolor Sb07g024500 N 0.769
SB09G000580 Sorghum bicolor Sb09g000580 N 0.714