ENSCJAG00000020672 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000020672 T35685_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.901
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.901
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.901
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.879
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.723
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000038443 RRM 16 85
ENSCJAP00000038443 RRM 107 176

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

247 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAA49741 Xenopus laevis AAA49741 I 0.809
AAA49742 Xenopus laevis AAA49742 I 0.809
AAA49949 Xenopus laevis AAA49949 I 0.773
AAA49950 Xenopus laevis AAA49950 I 0.762
AAH45260 Xenopus laevis AAH45260 I 0.823
AAH72090 Xenopus laevis AAH72090 I 0.823
AAI69881 Xenopus laevis AAI69881 I 0.762
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.901
Ame_R015370 Ailuropoda melanoleuca Ame_R015370 I 0.705
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.821
CBF67555 Xenopus laevis CBF67555 I 0.809
CBF67578 Xenopus laevis CBF67578 I 0.762
CBF67672 Xenopus laevis CBF67672 I 0.823
CBU92428 Xenopus laevis CBU92428 I 0.809
CBU92451 Xenopus laevis CBU92451 I 0.762
CBU92546 Xenopus laevis CBU92546 I 0.823
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.713
D3ZQR9_RAT Rattus norvegicus ENSRNOG00000027605 I 0.708
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.759
D3ZX95_RAT Rattus norvegicus ENSRNOG00000027006 I 0.711
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.766
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.851
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.879
D4ABW2_RAT Rattus norvegicus ENSRNOG00000032168 I 0.719
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.864
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.887
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.789
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.836
ENSCAFG00000003418 Canis familiaris ENSCAFG00000003418 I 0.707
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.803
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.803
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.782
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.829
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.790
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.745
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.714
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.865
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.816
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.804
ENSCAFG00000007918 Canis familiaris ENSCAFG00000007918 I 0.712
ENSCAFG00000008301 Canis familiaris ENSCAFG00000008301 I 0.741
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.724
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.736
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.887
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.831
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.731
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.775
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.836
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.766
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.817
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.782
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.717
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.810
ENSCAFG00000018456 Canis familiaris ENSCAFG00000018456 I 0.728
ENSCAFG00000019097 Canis familiaris ENSCAFG00000019097 I 0.703
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.803
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.811
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.810
ENSCAFG00000024812 Canis familiaris ENSCAFG00000024812 I 0.704
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.761
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.790
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.821
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.850
ENSCJAG00000001302 Callithrix jacchus ENSCJAG00000001302 I 0.761
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.824
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.829
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.865
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.736
ENSCJAG00000005407 Callithrix jacchus ENSCJAG00000005407 I 0.721
ENSCJAG00000006928 Callithrix jacchus ENSCJAG00000006928 I 0.702
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.843
ENSCJAG00000007634 Callithrix jacchus ENSCJAG00000007634 I 0.712
ENSCJAG00000007639 Callithrix jacchus ENSCJAG00000007639 I 0.750
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.732
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.837
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.879
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.864
ENSCJAG00000017130 Callithrix jacchus ENSCJAG00000017130 I 0.800
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.901
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.872
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.865
ENSCJAG00000032970 Callithrix jacchus ENSCJAG00000032970 I 0.793
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.807
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.901
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.850
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.775
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.879
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.901
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.872
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.887
ENSEEUG00000009941 Erinaceus europaeus ENSEEUG00000009941 I 0.793
ENSEEUG00000011837 Erinaceus europaeus ENSEEUG00000011837 I 0.779
ENSETEG00000001872 Echinops telfairi ENSETEG00000001872 I 0.716
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.829
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.901
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.901
ENSG00000231942 Homo sapiens ENSG00000231942 I 0.731
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.816
ENSGGOG00000022020 Gorilla gorilla ENSGGOG00000022020 I 0.730
ENSGGOG00000024290 Gorilla gorilla ENSGGOG00000024290 I 0.717
ENSGGOG00000025265 Gorilla gorilla ENSGGOG00000025265 I 0.800
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.887
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.709
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.829
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.829
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.879
ENSLAFG00000029171 Loxodonta africana ENSLAFG00000029171 I 0.748
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.894
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.879
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.866
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.775
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.901
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.831
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.887
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.775
ENSMMUG00000004182 Macaca mulatta ENSMMUG00000004182 I 0.718
ENSMMUG00000004528 Macaca mulatta ENSMMUG00000004528 I 0.731
ENSMMUG00000005750 Macaca mulatta ENSMMUG00000005750 I 0.717
ENSMMUG00000005993 Macaca mulatta ENSMMUG00000005993 I 0.729
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.843
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.745
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.745
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.814
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.767
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.864
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.781
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.789
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.872
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.887
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.901
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.865
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.887
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.894
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.864
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.872
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.887
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.894
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.901
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.901
ENSOGAG00000002398 Otolemur garnettii ENSOGAG00000002398 I 0.705
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.879
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.731
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.894
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.809
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.786
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.746
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.710
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.739
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.858
ENSPTRG00000018253 Pan troglodytes ENSPTRG00000018253 I 0.702
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.901
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.851
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.836
ENSRNOG00000013650 Rattus norvegicus ENSRNOG00000013650 I 0.718
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.836
ENSRNOG00000023438 Rattus norvegicus ENSRNOG00000023438 I 0.800
ENSRNOG00000030901 Rattus norvegicus ENSRNOG00000030901 I 0.723
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.859
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.879
ENSRNOG00000042093 Rattus norvegicus ENSRNOG00000042093 I 0.718
ENSSARG00000008882 Sorex araneus ENSSARG00000008882 I 0.730
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.816
ENSSARG00000010620 Sorex araneus ENSSARG00000010620 I 0.723
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.901
ENSSSCG00000005428 Sus scrofa ENSSSCG00000005428 I 0.786
ENSSSCG00000015989 Sus scrofa ENSSSCG00000015989 I 0.711
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.850
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.901
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.857
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.893
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.752
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.901
Gm8991 Mus musculus ENSMUSG00000059179 I 0.780
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.766
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.901
HNRNPA1 Homo sapiens ENSG00000135486 D 0.901
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.901
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.830
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.816
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.901
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.879
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.901
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.775
HNRNPA3 Tetraodon nigroviridis ENSTNIG00000016958 I 0.716
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.773
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.775
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.730
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.787
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.775
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.773
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.775
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.775
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.738
HNRNPA3 Loxodonta africana ENSLAFG00000027712 I 0.711
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.775
HNRNPA3 Gasterosteus aculeatus ENSGACG00000004477 I 0.734
HNRNPA3 Homo sapiens ENSG00000170144 I 0.775
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.775
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.775
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.780
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.775
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.773
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.734
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.768
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.775
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.775
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.773
LOC100054206 Equus caballus ENSECAG00000006699 I 0.831
LOC100066794 Equus caballus ENSECAG00000023237 I 0.773
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.775
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.901
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.857
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.894
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.879
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.872
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.775
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.879
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.901
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.901
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.879
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.894
LOC781499 Bos taurus ENSBTAG00000021580 I 0.775
LOC785445 Bos taurus ENSBTAG00000025621 I 0.871
P17130 Xenopus laevis P17130 I 0.809
P51968 Xenopus laevis P51968 I 0.773
P51992 Xenopus laevis P51992 I 0.762
Q1KKS6_FUGRU Takifugu rubripes ENSTRUG00000017504 I 0.706
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.766
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.901
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.901
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.879
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.901
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.901
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.901
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.775
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.803
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.901
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.789
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.735
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.865
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.879
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.830
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.857
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.829
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.803
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.750
zgc:66127 Danio rerio ENSDARG00000011020 I 0.745