CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOC100066794
(
Equus caballus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSECAG00000023237
T36707_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPA1
M312_0.6
Homo sapiens
Sequence logo not available
UAGGGW
RIP-chip
Cook et al.(2011)
560_17925491
0.871
HNRNPA1
M271_0.6
Homo sapiens
UAGGGW
SELEX
Cook et al.(2011)
23_7510636
0.871
HNRNPA1
M022_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00022
0.871
HNRNPA1L2
M023_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00023
0.850
HNRNPA2B1
M024_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00024
0.793
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSECAP00000020855
RRM
14
83
LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFVFVTYSCVEEVDAAMCARPHKVDGRVVE
ENSECAP00000020855
RRM
105
174
IFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCE
Links
Other
RRM
family RBPs
Other
Equus caballus
RBPs
292 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC_Os02g29570
Oryza sativa
LOC_Os02g29570
N
0.000
PGTG_02503
Puccinia graminis
PGTG_02503
N
0.000
PGTG_10340
Puccinia graminis
PGTG_10340
N
0.000
PGTG_17297
Puccinia graminis
PGTG_17297
N
0.000
PTTG_00921
Puccinia triticina
PTTG_00921
N
0.000
PTTG_05176
Puccinia triticina
PTTG_05176
N
0.000
PTTG_10560
Puccinia triticina
PTTG_10560
N
0.000
PTTG_10569
Puccinia triticina
PTTG_10569
N
0.000