LOC100066794 (Equus caballus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSECAG00000023237 T36707_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.871
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.871
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.871
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.850
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.793
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSECAP00000020855 RRM 14 83
ENSECAP00000020855 RRM 105 174

Links

Other RRM family RBPs
Other Equus caballus RBPs

292 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os02g29570 Oryza sativa LOC_Os02g29570 N 0.000
PGTG_02503 Puccinia graminis PGTG_02503 N 0.000
PGTG_10340 Puccinia graminis PGTG_10340 N 0.000
PGTG_17297 Puccinia graminis PGTG_17297 N 0.000
PTTG_00921 Puccinia triticina PTTG_00921 N 0.000
PTTG_05176 Puccinia triticina PTTG_05176 N 0.000
PTTG_10560 Puccinia triticina PTTG_10560 N 0.000
PTTG_10569 Puccinia triticina PTTG_10569 N 0.000