CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSCJAG00000020672
(
Callithrix jacchus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSCJAG00000020672
T35685_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPA1
M312_0.6
Homo sapiens
Sequence logo not available
UAGGGW
RIP-chip
Cook et al.(2011)
560_17925491
0.901
HNRNPA1
M271_0.6
Homo sapiens
UAGGGW
SELEX
Cook et al.(2011)
23_7510636
0.901
HNRNPA1
M022_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00022
0.901
HNRNPA1L2
M023_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00023
0.879
HNRNPA2B1
M024_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00024
0.723
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCJAP00000038443
RRM
16
85
LFIGELSFETTDESLRSHFEQWGTLTDCVVMRGPNTKCSRRVGFVTYATVEQVDAAMNARPHKVDGRVVE
ENSCJAP00000038443
RRM
107
176
IFVGGIKEDTEEHHLRDYFKQYGKIEVIEIMTDRGNCKKRGFDFVTFDDCDSVDKIVIQKYHNVNGHNCE
Links
Other
RRM
family RBPs
Other
Callithrix jacchus
RBPs
247 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC100070669
Equus caballus
ENSECAG00000023932
N
0.000
SRSF6
Loxodonta africana
ENSLAFG00000006682
N
0.000
SRSF6
Macaca mulatta
ENSMMUG00000006742
N
0.000
SRSF6
Meleagris gallopavo
ENSMGAG00000000888
N
0.000
SRSF6
Monodelphis domestica
ENSMODG00000003107
I
0.000
SRSF6
Myotis lucifugus
ENSMLUG00000016618
N
0.000
SRSF6
Ochotona princeps
ENSOPRG00000002017
N
0.000
SRSF6
Ornithorhynchus anatinus
ENSOANG00000008955
N
0.000
XR_023431.1
Pan troglodytes
ENSPTRG00000013506
N
0.000
SRSF4
Sorex araneus
ENSSARG00000001277
N
0.000
SRSF6
Spermophilus tridecemlineatus
ENSSTOG00000010866
N
0.000
SRSF6
Tursiops truncatus
ENSTTRG00000015410
N
0.000