ENSCJAG00000020672 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000020672 T35685_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.901
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.901
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.901
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.879
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.723
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000038443 RRM 16 85
ENSCJAP00000038443 RRM 107 176

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

247 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC100070669 Equus caballus ENSECAG00000023932 N 0.000
SRSF6 Loxodonta africana ENSLAFG00000006682 N 0.000
SRSF6 Macaca mulatta ENSMMUG00000006742 N 0.000
SRSF6 Meleagris gallopavo ENSMGAG00000000888 N 0.000
SRSF6 Monodelphis domestica ENSMODG00000003107 I 0.000
SRSF6 Myotis lucifugus ENSMLUG00000016618 N 0.000
SRSF6 Ochotona princeps ENSOPRG00000002017 N 0.000
SRSF6 Ornithorhynchus anatinus ENSOANG00000008955 N 0.000
XR_023431.1 Pan troglodytes ENSPTRG00000013506 N 0.000
SRSF4 Sorex araneus ENSSARG00000001277 N 0.000
SRSF6 Spermophilus tridecemlineatus ENSSTOG00000010866 N 0.000
SRSF6 Tursiops truncatus ENSTTRG00000015410 N 0.000