PABPC3 (Takifugu rubripes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTRUG00000011577 T42322_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.946
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.946
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.946
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.889
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.853
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000029262 RRM 13 83
ENSTRUP00000029262 RRM 101 169
ENSTRUP00000029262 RRM 193 262
ENSTRUP00000029262 RRM 296 364

Links

Other RRM family RBPs
Other Takifugu rubripes RBPs

172 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RAVER2 Bos taurus ENSBTAG00000030686 N 0.000
LOC100406727 Callithrix jacchus ENSCJAG00000016724 N 0.000
RAVER2 Canis familiaris ENSCAFG00000018617 N 0.000
RAVER2 Cavia porcellus ENSCPOG00000005986 N 0.000
Raver2 Dipodomys ordii ENSDORG00000002498 N 0.000
RAVER2 Equus caballus ENSECAG00000022014 N 0.000
RAVER2 Gallus gallus ENSGALG00000011026 N 0.000
RAVER2 Gorilla gorilla ENSGGOG00000016447 N 0.000
RAVER2 Homo sapiens ENSG00000162437 N 0.000
RAVER2 Loxodonta africana ENSLAFG00000012508 N 0.000
RAVER2 Macaca mulatta ENSMMUG00000018565 N 0.000
RAVER2 Meleagris gallopavo ENSMGAG00000011806 N 0.000
RAVER2 Monodelphis domestica ENSMODG00000001242 N 0.000
RAVER2 Otolemur garnettii ENSOGAG00000011157 N 0.000
RAVER2 Pan troglodytes ENSPTRG00000000824 N 0.000
ENSPPYG00000001271 Pongo pygmaeus ENSPPYG00000001271 N 0.000
RAVER2 Pteropus vampyrus ENSPVAG00000007172 N 0.000
RAVER2 Taeniopygia guttata ENSTGUG00000009973 N 0.000
RAVER2 Tarsius syrichta ENSTSYG00000006019 N 0.000
RAVER2 Tupaia belangeri ENSTBEG00000009004 N 0.000