CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PABPC3
(
Takifugu rubripes
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTRUG00000011577
T42322_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
PABPC1
M349_0.6
Homo sapiens
ACDAAYM
SELEX
Cook et al.(2011)
950_7908267
0.946
PABPC1
M275_0.6
Homo sapiens
AAAAA
SELEX
Cook et al.(2011)
24_7908267
0.946
PABPC1
M146_0.6
Homo sapiens
ARAAAAM
RNAcompete
Ray et al.(2013)
RNCMPT00155
0.946
PABPC3
M144_0.6
Homo sapiens
RAAAACM
RNAcompete
Ray et al.(2013)
RNCMPT00153
0.889
PABPC4
M042_0.6
Homo sapiens
AAAAAAR
RNAcompete
Ray et al.(2013)
RNCMPT00043
0.853
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTRUP00000029262
RRM
13
83
LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPLR
ENSTRUP00000029262
RRM
101
169
IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVF
ENSTRUP00000029262
RRM
193
262
VYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDDGGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVY
ENSTRUP00000029262
RRM
296
364
LYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY
Links
Other
RRM
family RBPs
Other
Takifugu rubripes
RBPs
172 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RAVER2
Bos taurus
ENSBTAG00000030686
N
0.000
LOC100406727
Callithrix jacchus
ENSCJAG00000016724
N
0.000
RAVER2
Canis familiaris
ENSCAFG00000018617
N
0.000
RAVER2
Cavia porcellus
ENSCPOG00000005986
N
0.000
Raver2
Dipodomys ordii
ENSDORG00000002498
N
0.000
RAVER2
Equus caballus
ENSECAG00000022014
N
0.000
RAVER2
Gallus gallus
ENSGALG00000011026
N
0.000
RAVER2
Gorilla gorilla
ENSGGOG00000016447
N
0.000
RAVER2
Homo sapiens
ENSG00000162437
N
0.000
RAVER2
Loxodonta africana
ENSLAFG00000012508
N
0.000
RAVER2
Macaca mulatta
ENSMMUG00000018565
N
0.000
RAVER2
Meleagris gallopavo
ENSMGAG00000011806
N
0.000
RAVER2
Monodelphis domestica
ENSMODG00000001242
N
0.000
RAVER2
Otolemur garnettii
ENSOGAG00000011157
N
0.000
RAVER2
Pan troglodytes
ENSPTRG00000000824
N
0.000
ENSPPYG00000001271
Pongo pygmaeus
ENSPPYG00000001271
N
0.000
RAVER2
Pteropus vampyrus
ENSPVAG00000007172
N
0.000
RAVER2
Taeniopygia guttata
ENSTGUG00000009973
N
0.000
RAVER2
Tarsius syrichta
ENSTSYG00000006019
N
0.000
RAVER2
Tupaia belangeri
ENSTBEG00000009004
N
0.000